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ADAT1 (adenosine deaminase, tRNA specific 1)

Identity

Other aliasHADAT1
HGNC (Hugo) ADAT1
LocusID (NCBI) 23536
Atlas_Id 60151
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 75596879 and ends at 75623323 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BBS2 (16q12.2) / ADAT1 (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADAT1   228
Cards
Entrez_Gene (NCBI)ADAT1  23536  adenosine deaminase, tRNA specific 1
AliasesHADAT1
GeneCards (Weizmann)ADAT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:75596879-75623323 [Contig_View]  ADAT1 [Vega]
TCGA cBioPortalADAT1
AceView (NCBI)ADAT1
Genatlas (Paris)ADAT1
WikiGenes23536
SOURCE (Princeton)ADAT1
Genetics Home Reference (NIH)ADAT1
Genomic and cartography
GoldenPath hg38 (UCSC)ADAT1  -     chr16:75596879-75623323 -  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADAT1  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblADAT1 - 16q23.1 [CytoView hg19]  ADAT1 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBIADAT1 [Mapview hg19]  ADAT1 [Mapview hg38]
OMIM604230   
Gene and transcription
Genbank (Entrez)AF125188 AK001687 AK296834 AK314652 BC002758
RefSeq transcript (Entrez)NM_001324444 NM_001324445 NM_001324446 NM_001324448 NM_001324449 NM_001324450 NM_001324451 NM_001324452 NM_001324453 NM_012091
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADAT1
Cluster EST : UnigeneHs.729312 [ NCBI ]
CGAP (NCI)Hs.729312
Gene ExpressionADAT1 [ NCBI-GEO ]   ADAT1 [ EBI - ARRAY_EXPRESS ]   ADAT1 [ SEEK ]   ADAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23536
GTEX Portal (Tissue expression)ADAT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUB4
Splice isoforms : SwissVarQ9BUB4
Catalytic activity : Enzyme3.5.4.34 [ Enzyme-Expasy ]   3.5.4.343.5.4.34 [ IntEnz-EBI ]   3.5.4.34 [ BRENDA ]   3.5.4.34 [ KEGG ]   
PhosPhoSitePlusQ9BUB4
Domaine pattern : Prosite (Expaxy)A_DEAMIN_EDITASE (PS50141)   
Domains : Interpro (EBI)A_deamin   
Domain families : Pfam (Sanger)A_deamin (PF02137)   
Domain families : Pfam (NCBI)pfam02137   
Domain families : Smart (EMBL)ADEAMc (SM00552)  
Conserved Domain (NCBI)ADAT1
DMDM Disease mutations23536
Blocks (Seattle)ADAT1
SuperfamilyQ9BUB4
Peptide AtlasQ9BUB4
HPRD11970
IPIIPI00305945   IPI00645605   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUB4
IntAct (EBI)Q9BUB4
BioGRIDADAT1
STRING (EMBL)ADAT1
ZODIACADAT1
Ontologies - Pathways
QuickGOQ9BUB4
Ontology : AmiGORNA binding  tRNA processing  tRNA-specific adenosine deaminase activity  metal ion binding  
Ontology : EGO-EBIRNA binding  tRNA processing  tRNA-specific adenosine deaminase activity  metal ion binding  
NDEx NetworkADAT1
Atlas of Cancer Signalling NetworkADAT1
Wikipedia pathwaysADAT1
Orthology - Evolution
OrthoDB23536
Phylogenetic Trees/Animal Genes : TreeFamADAT1
HOVERGENQ9BUB4
HOGENOMQ9BUB4
Homologs : HomoloGeneADAT1
Homology/Alignments : Family Browser (UCSC)ADAT1
Gene fusions - Rearrangements
Tumor Fusion PortalADAT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADAT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADAT1
dbVarADAT1
ClinVarADAT1
1000_GenomesADAT1 
Exome Variant ServerADAT1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP23536
Genomic Variants (DGV)ADAT1 [DGVbeta]
DECIPHERADAT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADAT1 
Mutations
ICGC Data PortalADAT1 
TCGA Data PortalADAT1 
Broad Tumor PortalADAT1
OASIS PortalADAT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADAT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDADAT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADAT1
DgiDB (Drug Gene Interaction Database)ADAT1
DoCM (Curated mutations)ADAT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADAT1 (select a term)
intoGenADAT1
Cancer3DADAT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604230   
Orphanet
DisGeNETADAT1
MedgenADAT1
Genetic Testing Registry ADAT1
NextProtQ9BUB4 [Medical]
TSGene23536
GENETestsADAT1
Target ValidationADAT1
Huge Navigator ADAT1 [HugePedia]
snp3D : Map Gene to Disease23536
BioCentury BCIQADAT1
ClinGenADAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23536
Chemical/Pharm GKB GenePA24558
Clinical trialADAT1
Miscellaneous
canSAR (ICR)ADAT1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADAT1
EVEXADAT1
GoPubMedADAT1
iHOPADAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:32:48 CET 2017

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