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ADAT3 (adenosine deaminase, tRNA specific 3)

Identity

Alias_namesadenosine deaminase, tRNA-specific 3, TAD3 homolog (S. cerevisiae)
Alias_symbol (synonym)TAD3
Other aliasFWP005
MRT36
MST121
MSTP121
S863-5
HGNC (Hugo) ADAT3
LocusID (NCBI) 113179
Atlas_Id 60153
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1905214 and ends at 1913447 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADAT3   25151
Cards
Entrez_Gene (NCBI)ADAT3  113179  adenosine deaminase, tRNA specific 3
AliasesFWP005; MRT36; MST121; MSTP121; 
S863-5; TAD3
GeneCards (Weizmann)ADAT3
Ensembl hg19 (Hinxton)ENSG00000213638 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213638 [Gene_View]  chr19:1905214-1913447 [Contig_View]  ADAT3 [Vega]
ICGC DataPortalENSG00000213638
TCGA cBioPortalADAT3
AceView (NCBI)ADAT3
Genatlas (Paris)ADAT3
WikiGenes113179
SOURCE (Princeton)ADAT3
Genetics Home Reference (NIH)ADAT3
Genomic and cartography
GoldenPath hg38 (UCSC)ADAT3  -     chr19:1905214-1913447 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADAT3  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblADAT3 - 19p13.3 [CytoView hg19]  ADAT3 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIADAT3 [Mapview hg19]  ADAT3 [Mapview hg38]
OMIM615286   615302   
Gene and transcription
Genbank (Entrez)BC011824 DB127534 HY023983 HY030731
RefSeq transcript (Entrez)NM_001329533 NM_138422
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADAT3
Cluster EST : UnigeneHs.144980 [ NCBI ]
CGAP (NCI)Hs.144980
Alternative Splicing GalleryENSG00000213638
Gene ExpressionADAT3 [ NCBI-GEO ]   ADAT3 [ EBI - ARRAY_EXPRESS ]   ADAT3 [ SEEK ]   ADAT3 [ MEM ]
Gene Expression Viewer (FireBrowse)ADAT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113179
GTEX Portal (Tissue expression)ADAT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EY9
Splice isoforms : SwissVarQ96EY9
PhosPhoSitePlusQ96EY9
Domaine pattern : Prosite (Expaxy)CYT_DCMP_DEAMINASES_2 (PS51747)   
Domains : Interpro (EBI)CMP_dCMP_Zn-bd    Cytidine_deaminase-like   
Domain families : Pfam (Sanger)dCMP_cyt_deam_1 (PF00383)   
Domain families : Pfam (NCBI)pfam00383   
Conserved Domain (NCBI)ADAT3
DMDM Disease mutations113179
Blocks (Seattle)ADAT3
SuperfamilyQ96EY9
Human Protein AtlasENSG00000213638
Peptide AtlasQ96EY9
HPRD14000
IPIIPI00061802   IPI00384912   IPI00917223   
Protein Interaction databases
DIP (DOE-UCLA)Q96EY9
IntAct (EBI)Q96EY9
FunCoupENSG00000213638
BioGRIDADAT3
STRING (EMBL)ADAT3
ZODIACADAT3
Ontologies - Pathways
QuickGOQ96EY9
Ontology : AmiGOcatalytic activity  nucleoplasm  tRNA modification  zinc ion binding  
Ontology : EGO-EBIcatalytic activity  nucleoplasm  tRNA modification  zinc ion binding  
NDEx NetworkADAT3
Atlas of Cancer Signalling NetworkADAT3
Wikipedia pathwaysADAT3
Orthology - Evolution
OrthoDB113179
GeneTree (enSembl)ENSG00000213638
Phylogenetic Trees/Animal Genes : TreeFamADAT3
HOVERGENQ96EY9
HOGENOMQ96EY9
Homologs : HomoloGeneADAT3
Homology/Alignments : Family Browser (UCSC)ADAT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADAT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADAT3
dbVarADAT3
ClinVarADAT3
1000_GenomesADAT3 
Exome Variant ServerADAT3
ExAC (Exome Aggregation Consortium)ADAT3 (select the gene name)
Genetic variants : HAPMAP113179
Genomic Variants (DGV)ADAT3 [DGVbeta]
DECIPHERADAT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADAT3 
Mutations
ICGC Data PortalADAT3 
TCGA Data PortalADAT3 
Broad Tumor PortalADAT3
OASIS PortalADAT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADAT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDADAT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADAT3
DgiDB (Drug Gene Interaction Database)ADAT3
DoCM (Curated mutations)ADAT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADAT3 (select a term)
intoGenADAT3
Cancer3DADAT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615286    615302   
Orphanet22318   
MedgenADAT3
Genetic Testing Registry ADAT3
NextProtQ96EY9 [Medical]
TSGene113179
GENETestsADAT3
Target ValidationADAT3
Huge Navigator ADAT3 [HugePedia]
snp3D : Map Gene to Disease113179
BioCentury BCIQADAT3
ClinGenADAT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113179
Chemical/Pharm GKB GenePA162375609
Clinical trialADAT3
Miscellaneous
canSAR (ICR)ADAT3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADAT3
EVEXADAT3
GoPubMedADAT3
iHOPADAT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:00:55 CEST 2017

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