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ADCK5 (aarF domain containing kinase 5)

Identity

Alias_symbol (synonym)FLJ35454
Other alias-
HGNC (Hugo) ADCK5
LocusID (NCBI) 203054
Atlas_Id 43105
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144374015 and ends at 144393238 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADCK5 (8q24.3) / C8orf34 (8q13.2)ADCK5 (8q24.3) / SPIRE1 (18p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADCK5   21738
Cards
Entrez_Gene (NCBI)ADCK5  203054  aarF domain containing kinase 5
Aliases
GeneCards (Weizmann)ADCK5
Ensembl hg19 (Hinxton)ENSG00000173137 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173137 [Gene_View]  chr8:144374015-144393238 [Contig_View]  ADCK5 [Vega]
ICGC DataPortalENSG00000173137
TCGA cBioPortalADCK5
AceView (NCBI)ADCK5
Genatlas (Paris)ADCK5
WikiGenes203054
SOURCE (Princeton)ADCK5
Genetics Home Reference (NIH)ADCK5
Genomic and cartography
GoldenPath hg38 (UCSC)ADCK5  -     chr8:144374015-144393238 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADCK5  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblADCK5 - 8q24.3 [CytoView hg19]  ADCK5 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIADCK5 [Mapview hg19]  ADCK5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092773 BC031570 BC032402 BC064345 BC085013
RefSeq transcript (Entrez)NM_174922
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADCK5
Cluster EST : UnigeneHs.283374 [ NCBI ]
CGAP (NCI)Hs.283374
Alternative Splicing GalleryENSG00000173137
Gene ExpressionADCK5 [ NCBI-GEO ]   ADCK5 [ EBI - ARRAY_EXPRESS ]   ADCK5 [ SEEK ]   ADCK5 [ MEM ]
Gene Expression Viewer (FireBrowse)ADCK5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203054
GTEX Portal (Tissue expression)ADCK5
Human Protein AtlasENSG00000173137-ADCK5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MIX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3MIX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3MIX3
Splice isoforms : SwissVarQ3MIX3
PhosPhoSitePlusQ3MIX3
Domains : Interpro (EBI)Kinase-like_dom    UbiB_dom   
Domain families : Pfam (Sanger)ABC1 (PF03109)   
Domain families : Pfam (NCBI)pfam03109   
Conserved Domain (NCBI)ADCK5
DMDM Disease mutations203054
Blocks (Seattle)ADCK5
SuperfamilyQ3MIX3
Human Protein Atlas [tissue]ENSG00000173137-ADCK5 [tissue]
Peptide AtlasQ3MIX3
HPRD12427
IPIIPI00418366   IPI00980662   IPI00981397   
Protein Interaction databases
DIP (DOE-UCLA)Q3MIX3
IntAct (EBI)Q3MIX3
FunCoupENSG00000173137
BioGRIDADCK5
STRING (EMBL)ADCK5
ZODIACADCK5
Ontologies - Pathways
QuickGOQ3MIX3
Ontology : AmiGOprotein serine/threonine kinase activity  protein binding  protein phosphorylation  integral component of membrane  
Ontology : EGO-EBIprotein serine/threonine kinase activity  protein binding  protein phosphorylation  integral component of membrane  
NDEx NetworkADCK5
Atlas of Cancer Signalling NetworkADCK5
Wikipedia pathwaysADCK5
Orthology - Evolution
OrthoDB203054
GeneTree (enSembl)ENSG00000173137
Phylogenetic Trees/Animal Genes : TreeFamADCK5
HOVERGENQ3MIX3
HOGENOMQ3MIX3
Homologs : HomoloGeneADCK5
Homology/Alignments : Family Browser (UCSC)ADCK5
Gene fusions - Rearrangements
Tumor Fusion PortalADCK5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADCK5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADCK5
dbVarADCK5
ClinVarADCK5
1000_GenomesADCK5 
Exome Variant ServerADCK5
ExAC (Exome Aggregation Consortium)ENSG00000173137
GNOMAD BrowserENSG00000173137
Genetic variants : HAPMAP203054
Genomic Variants (DGV)ADCK5 [DGVbeta]
DECIPHERADCK5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADCK5 
Mutations
ICGC Data PortalADCK5 
TCGA Data PortalADCK5 
Broad Tumor PortalADCK5
OASIS PortalADCK5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADCK5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDADCK5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ADCK5
DgiDB (Drug Gene Interaction Database)ADCK5
DoCM (Curated mutations)ADCK5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADCK5 (select a term)
intoGenADCK5
Cancer3DADCK5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETADCK5
MedgenADCK5
Genetic Testing Registry ADCK5
NextProtQ3MIX3 [Medical]
TSGene203054
GENETestsADCK5
Target ValidationADCK5
Huge Navigator ADCK5 [HugePedia]
snp3D : Map Gene to Disease203054
BioCentury BCIQADCK5
ClinGenADCK5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203054
Chemical/Pharm GKB GenePA134963849
Clinical trialADCK5
Miscellaneous
canSAR (ICR)ADCK5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADCK5
EVEXADCK5
GoPubMedADCK5
iHOPADCK5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:02:09 CET 2017

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