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ADCK5 (aarF domain containing kinase 5)

Identity

HGNC (Hugo) ADCK5
LocusID (NCBI) 203054
Atlas_Id 43105
Location 8q24.3
Location_base_pair Starts at 145597704 and ends at 145618453 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADCK5 (8q24.3) / C8orf34 (8q13.2)ADCK5 (8q24.3) / SPIRE1 (18p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADCK5   21738
Cards
Entrez_Gene (NCBI)ADCK5  203054  aarF domain containing kinase 5
GeneCards (Weizmann)ADCK5
Ensembl hg19 (Hinxton)ENSG00000173137 [Gene_View]  chr8:145597704-145618453 [Contig_View]  ADCK5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000173137 [Gene_View]  chr8:145597704-145618453 [Contig_View]  ADCK5 [Vega]
ICGC DataPortalENSG00000173137
TCGA cBioPortalADCK5
AceView (NCBI)ADCK5
Genatlas (Paris)ADCK5
WikiGenes203054
SOURCE (Princeton)ADCK5
Genomic and cartography
GoldenPath hg19 (UCSC)ADCK5  -     chr8:145597704-145618453 +  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ADCK5  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblADCK5 - 8q24.3 [CytoView hg19]  ADCK5 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIADCK5 [Mapview hg19]  ADCK5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092773 BC031570 BC032402 BC064345 BC085013
RefSeq transcript (Entrez)NM_174922
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929341
Consensus coding sequences : CCDS (NCBI)ADCK5
Cluster EST : UnigeneHs.283374 [ NCBI ]
CGAP (NCI)Hs.283374
Alternative Splicing GalleryENSG00000173137
Gene ExpressionADCK5 [ NCBI-GEO ]   ADCK5 [ EBI - ARRAY_EXPRESS ]   ADCK5 [ SEEK ]   ADCK5 [ MEM ]
Gene Expression Viewer (FireBrowse)ADCK5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203054
GTEX Portal (Tissue expression)ADCK5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MIX3 (Uniprot)
NextProtQ3MIX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3MIX3
Splice isoforms : SwissVarQ3MIX3 (Swissvar)
PhosPhoSitePlusQ3MIX3
Domains : Interpro (EBI)Kinase-like_dom    UbiB_dom   
Domain families : Pfam (Sanger)ABC1 (PF03109)   
Domain families : Pfam (NCBI)pfam03109   
DMDM Disease mutations203054
Blocks (Seattle)ADCK5
SuperfamilyQ3MIX3
Human Protein AtlasENSG00000173137
Peptide AtlasQ3MIX3
HPRD12427
IPIIPI00418366   IPI00980662   IPI00981397   
Protein Interaction databases
DIP (DOE-UCLA)Q3MIX3
IntAct (EBI)Q3MIX3
FunCoupENSG00000173137
BioGRIDADCK5
STRING (EMBL)ADCK5
ZODIACADCK5
Ontologies - Pathways
QuickGOQ3MIX3
Ontology : AmiGOprotein serine/threonine kinase activity  protein binding  protein phosphorylation  integral component of membrane  
Ontology : EGO-EBIprotein serine/threonine kinase activity  protein binding  protein phosphorylation  integral component of membrane  
NDEx Network
Atlas of Cancer Signalling NetworkADCK5
Wikipedia pathwaysADCK5
Orthology - Evolution
OrthoDB203054
GeneTree (enSembl)ENSG00000173137
Phylogenetic Trees/Animal Genes : TreeFamADCK5
Homologs : HomoloGeneADCK5
Homology/Alignments : Family Browser (UCSC)ADCK5
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerADCK5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADCK5
dbVarADCK5
ClinVarADCK5
1000_GenomesADCK5 
Exome Variant ServerADCK5
ExAC (Exome Aggregation Consortium)ADCK5 (select the gene name)
Genetic variants : HAPMAP203054
Genomic Variants (DGV)ADCK5 [DGVbeta]
Mutations
ICGC Data PortalADCK5 
TCGA Data PortalADCK5 
Broad Tumor PortalADCK5
OASIS PortalADCK5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADCK5 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ADCK5
DgiDB (Drug Gene Interaction Database)ADCK5
DoCM (Curated mutations)ADCK5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADCK5 (select a term)
intoGenADCK5
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:145597704-145618453  ENSG00000173137
CONAN: Copy Number AnalysisADCK5 
Mutations and Diseases : HGMDADCK5
OMIM
MedgenADCK5
Genetic Testing Registry ADCK5
NextProtQ3MIX3 [Medical]
TSGene203054
GENETestsADCK5
Huge Navigator ADCK5 [HugePedia]
snp3D : Map Gene to Disease203054
BioCentury BCIQADCK5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203054
Chemical/Pharm GKB GenePA134963849
Clinical trialADCK5
Miscellaneous
canSAR (ICR)ADCK5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADCK5
EVEXADCK5
GoPubMedADCK5
iHOPADCK5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 8 18:36:04 CEST 2016

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