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ADGB (androglobin)

Identity

Alias_namesC6orf103
chromosome 6 open reading frame 103
Alias_symbol (synonym)FLJ23121
dJ408K24.1
CAPN16
Other alias
HGNC (Hugo) ADGB
LocusID (NCBI) 79747
Atlas_Id 55095
Location 6q24.3  [Link to chromosome band 6q24]
Location_base_pair Starts at 146599000 and ends at 146815461 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADGB   21212
Cards
Entrez_Gene (NCBI)ADGB  79747  androglobin
AliasesC6orf103; CAPN16
GeneCards (Weizmann)ADGB
Ensembl hg19 (Hinxton)ENSG00000118492 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118492 [Gene_View]  ENSG00000118492 [Sequence]  chr6:146599000-146815461 [Contig_View]  ADGB [Vega]
ICGC DataPortalENSG00000118492
TCGA cBioPortalADGB
AceView (NCBI)ADGB
Genatlas (Paris)ADGB
WikiGenes79747
SOURCE (Princeton)ADGB
Genetics Home Reference (NIH)ADGB
Genomic and cartography
GoldenPath hg38 (UCSC)ADGB  -     chr6:146599000-146815461 +  6q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADGB  -     6q24.3   [Description]    (hg19-Feb_2009)
EnsemblADGB - 6q24.3 [CytoView hg19]  ADGB - 6q24.3 [CytoView hg38]
Mapping of homologs : NCBIADGB [Mapview hg19]  ADGB [Mapview hg38]
OMIM614630   
Gene and transcription
Genbank (Entrez)AK026774 AK097570 AL832192 BG199812 DN831198
RefSeq transcript (Entrez)NM_024694
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADGB
Cluster EST : UnigeneHs.720870 [ NCBI ]
CGAP (NCI)Hs.720870
Alternative Splicing GalleryENSG00000118492
Gene ExpressionADGB [ NCBI-GEO ]   ADGB [ EBI - ARRAY_EXPRESS ]   ADGB [ SEEK ]   ADGB [ MEM ]
Gene Expression Viewer (FireBrowse)ADGB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79747
GTEX Portal (Tissue expression)ADGB
Human Protein AtlasENSG00000118492-ADGB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7X0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7X0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7X0
Splice isoforms : SwissVarQ8N7X0
PhosPhoSitePlusQ8N7X0
Domaine pattern : Prosite (Expaxy)CALPAIN_CAT (PS50203)    IQ (PS50096)   
Domains : Interpro (EBI)Globin/Proto    IQ_motif_EF-hand-BS    Peptidase_C2_calpain_cat   
Domain families : Pfam (Sanger)Peptidase_C2 (PF00648)   
Domain families : Pfam (NCBI)pfam00648   
Domain families : Smart (EMBL)CysPc (SM00230)  
Conserved Domain (NCBI)ADGB
DMDM Disease mutations79747
Blocks (Seattle)ADGB
SuperfamilyQ8N7X0
Human Protein Atlas [tissue]ENSG00000118492-ADGB [tissue]
Peptide AtlasQ8N7X0
IPIIPI00964550   IPI00332872   IPI00796114   IPI00647070   IPI00642735   IPI00980863   IPI00974512   IPI00974123   IPI00983194   IPI00974161   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7X0
IntAct (EBI)Q8N7X0
FunCoupENSG00000118492
BioGRIDADGB
STRING (EMBL)ADGB
ZODIACADGB
Ontologies - Pathways
QuickGOQ8N7X0
Ontology : AmiGOcalcium-dependent cysteine-type endopeptidase activity  cytoplasm  proteolysis  
Ontology : EGO-EBIcalcium-dependent cysteine-type endopeptidase activity  cytoplasm  proteolysis  
NDEx NetworkADGB
Atlas of Cancer Signalling NetworkADGB
Wikipedia pathwaysADGB
Orthology - Evolution
OrthoDB79747
GeneTree (enSembl)ENSG00000118492
Phylogenetic Trees/Animal Genes : TreeFamADGB
HOVERGENQ8N7X0
HOGENOMQ8N7X0
Homologs : HomoloGeneADGB
Homology/Alignments : Family Browser (UCSC)ADGB
Gene fusions - Rearrangements
Fusion : QuiverADGB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADGB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADGB
dbVarADGB
ClinVarADGB
1000_GenomesADGB 
Exome Variant ServerADGB
ExAC (Exome Aggregation Consortium)ENSG00000118492
GNOMAD BrowserENSG00000118492
Genetic variants : HAPMAP79747
Genomic Variants (DGV)ADGB [DGVbeta]
DECIPHERADGB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADGB 
Mutations
ICGC Data PortalADGB 
TCGA Data PortalADGB 
Broad Tumor PortalADGB
OASIS PortalADGB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADGB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDADGB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADGB
DgiDB (Drug Gene Interaction Database)ADGB
DoCM (Curated mutations)ADGB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADGB (select a term)
intoGenADGB
Cancer3DADGB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614630   
Orphanet
DisGeNETADGB
MedgenADGB
Genetic Testing Registry ADGB
NextProtQ8N7X0 [Medical]
TSGene79747
GENETestsADGB
Target ValidationADGB
Huge Navigator ADGB [HugePedia]
snp3D : Map Gene to Disease79747
BioCentury BCIQADGB
ClinGenADGB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79747
Chemical/Pharm GKB GenePA134944476
Clinical trialADGB
Miscellaneous
canSAR (ICR)ADGB (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADGB
EVEXADGB
GoPubMedADGB
iHOPADGB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:13:09 CEST 2018

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