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ADGRA1 (adhesion G protein-coupled receptor A1)

Identity

Alias_namesGPR123
G protein-coupled receptor 123
Alias_symbol (synonym)KIAA1828
Other alias
HGNC (Hugo) ADGRA1
LocusID (NCBI) 84435
Atlas_Id 76731
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 133088004 and ends at 133131675 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADGRA1   13838
Cards
Entrez_Gene (NCBI)ADGRA1  84435  adhesion G protein-coupled receptor A1
AliasesGPR123
GeneCards (Weizmann)ADGRA1
Ensembl hg19 (Hinxton)ENSG00000197177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197177 [Gene_View]  chr10:133088004-133131675 [Contig_View]  ADGRA1 [Vega]
ICGC DataPortalENSG00000197177
TCGA cBioPortalADGRA1
AceView (NCBI)ADGRA1
Genatlas (Paris)ADGRA1
WikiGenes84435
SOURCE (Princeton)ADGRA1
Genetics Home Reference (NIH)ADGRA1
Genomic and cartography
GoldenPath hg38 (UCSC)ADGRA1  -     chr10:133088004-133131675 +  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADGRA1  -     10q26.3   [Description]    (hg19-Feb_2009)
EnsemblADGRA1 - 10q26.3 [CytoView hg19]  ADGRA1 - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBIADGRA1 [Mapview hg19]  ADGRA1 [Mapview hg38]
OMIM612302   
Gene and transcription
Genbank (Entrez)AB058731 AK090982 AK094675 AK098741 AK124728
RefSeq transcript (Entrez)NM_001083909 NM_001291085 NM_032422
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADGRA1
Cluster EST : UnigeneHs.435183 [ NCBI ]
CGAP (NCI)Hs.435183
Alternative Splicing GalleryENSG00000197177
Gene ExpressionADGRA1 [ NCBI-GEO ]   ADGRA1 [ EBI - ARRAY_EXPRESS ]   ADGRA1 [ SEEK ]   ADGRA1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADGRA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84435
GTEX Portal (Tissue expression)ADGRA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SQ6
Splice isoforms : SwissVarQ86SQ6
PhosPhoSitePlusQ86SQ6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_4 (PS50261)   
Domains : Interpro (EBI)GPCR_2-like    GPCR_2_secretin-like    GPCR_2_secretin-like_CS   
Domain families : Pfam (Sanger)7tm_2 (PF00002)   
Domain families : Pfam (NCBI)pfam00002   
Conserved Domain (NCBI)ADGRA1
DMDM Disease mutations84435
Blocks (Seattle)ADGRA1
SuperfamilyQ86SQ6
Human Protein AtlasENSG00000197177
Peptide AtlasQ86SQ6
HPRD17058
IPIIPI00937870   IPI00410073   IPI00255554   IPI00940547   
Protein Interaction databases
DIP (DOE-UCLA)Q86SQ6
IntAct (EBI)Q86SQ6
FunCoupENSG00000197177
BioGRIDADGRA1
STRING (EMBL)ADGRA1
ZODIACADGRA1
Ontologies - Pathways
QuickGOQ86SQ6
Ontology : AmiGOG-protein coupled receptor activity  signal transduction  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  signal transduction  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  integral component of membrane  
NDEx NetworkADGRA1
Atlas of Cancer Signalling NetworkADGRA1
Wikipedia pathwaysADGRA1
Orthology - Evolution
OrthoDB84435
GeneTree (enSembl)ENSG00000197177
Phylogenetic Trees/Animal Genes : TreeFamADGRA1
HOVERGENQ86SQ6
HOGENOMQ86SQ6
Homologs : HomoloGeneADGRA1
Homology/Alignments : Family Browser (UCSC)ADGRA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADGRA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADGRA1
dbVarADGRA1
ClinVarADGRA1
1000_GenomesADGRA1 
Exome Variant ServerADGRA1
ExAC (Exome Aggregation Consortium)ADGRA1 (select the gene name)
Genetic variants : HAPMAP84435
Genomic Variants (DGV)ADGRA1 [DGVbeta]
DECIPHERADGRA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADGRA1 
Mutations
ICGC Data PortalADGRA1 
TCGA Data PortalADGRA1 
Broad Tumor PortalADGRA1
OASIS PortalADGRA1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADGRA1
BioMutasearch ADGRA1
DgiDB (Drug Gene Interaction Database)ADGRA1
DoCM (Curated mutations)ADGRA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADGRA1 (select a term)
intoGenADGRA1
Cancer3DADGRA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612302   
Orphanet
MedgenADGRA1
Genetic Testing Registry ADGRA1
NextProtQ86SQ6 [Medical]
TSGene84435
GENETestsADGRA1
Target ValidationADGRA1
Huge Navigator ADGRA1 [HugePedia]
snp3D : Map Gene to Disease84435
BioCentury BCIQADGRA1
ClinGenADGRA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84435
Chemical/Pharm GKB GenePA134910893
Clinical trialADGRA1
Miscellaneous
canSAR (ICR)ADGRA1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADGRA1
EVEXADGRA1
GoPubMedADGRA1
iHOPADGRA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:37:32 CEST 2017

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