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ADGRA1 (adhesion G protein-coupled receptor A1)

Identity

Alias (NCBI)GPR123
HGNC (Hugo) ADGRA1
HGNC Alias symbKIAA1828
HGNC Previous nameGPR123
HGNC Previous nameG protein-coupled receptor 123
LocusID (NCBI) 84435
Atlas_Id 76731
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 133102246 and ends at 133131675 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ADGRA1   13838
Cards
Entrez_Gene (NCBI)ADGRA1    adhesion G protein-coupled receptor A1
AliasesGPR123
GeneCards (Weizmann)ADGRA1
Ensembl hg19 (Hinxton)ENSG00000197177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197177 [Gene_View]  ENSG00000197177 [Sequence]  chr10:133102246-133131675 [Contig_View]  ADGRA1 [Vega]
ICGC DataPortalENSG00000197177
TCGA cBioPortalADGRA1
AceView (NCBI)ADGRA1
Genatlas (Paris)ADGRA1
SOURCE (Princeton)ADGRA1
Genetics Home Reference (NIH)ADGRA1
Genomic and cartography
GoldenPath hg38 (UCSC)ADGRA1  -     chr10:133102246-133131675 +  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADGRA1  -     10q26.3   [Description]    (hg19-Feb_2009)
GoldenPathADGRA1 - 10q26.3 [CytoView hg19]  ADGRA1 - 10q26.3 [CytoView hg38]
ImmunoBaseENSG00000197177
Genome Data Viewer NCBIADGRA1 [Mapview hg19]  
OMIM612302   
Gene and transcription
Genbank (Entrez)AB058731 AK090982 AK094675 AK098741 AK124728
RefSeq transcript (Entrez)NM_001083909 NM_001291085 NM_032422
Consensus coding sequences : CCDS (NCBI)ADGRA1
Gene ExpressionADGRA1 [ NCBI-GEO ]   ADGRA1 [ EBI - ARRAY_EXPRESS ]   ADGRA1 [ SEEK ]   ADGRA1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADGRA1 [ Firebrowse - Broad ]
GenevisibleExpression of ADGRA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84435
GTEX Portal (Tissue expression)ADGRA1
Human Protein AtlasENSG00000197177-ADGRA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SQ6
PhosPhoSitePlusQ86SQ6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_4 (PS50261)   
Domains : Interpro (EBI)GPCR_2-like    GPCR_2_secretin-like    GPCR_2_secretin-like_CS   
Domain families : Pfam (Sanger)7tm_2 (PF00002)   
Domain families : Pfam (NCBI)pfam00002   
Conserved Domain (NCBI)ADGRA1
SuperfamilyQ86SQ6
AlphaFold pdb e-kbQ86SQ6   
Human Protein Atlas [tissue]ENSG00000197177-ADGRA1 [tissue]
HPRD17058
Protein Interaction databases
DIP (DOE-UCLA)Q86SQ6
IntAct (EBI)Q86SQ6
BioGRIDADGRA1
STRING (EMBL)ADGRA1
ZODIACADGRA1
Ontologies - Pathways
QuickGOQ86SQ6
Ontology : AmiGOG protein-coupled receptor activity  plasma membrane  signal transduction  cell surface receptor signaling pathway  G protein-coupled receptor signaling pathway  postsynaptic density  integral component of membrane  glutamatergic synapse  
Ontology : EGO-EBIG protein-coupled receptor activity  plasma membrane  signal transduction  cell surface receptor signaling pathway  G protein-coupled receptor signaling pathway  postsynaptic density  integral component of membrane  glutamatergic synapse  
NDEx NetworkADGRA1
Atlas of Cancer Signalling NetworkADGRA1
Wikipedia pathwaysADGRA1
Orthology - Evolution
OrthoDB84435
GeneTree (enSembl)ENSG00000197177
Phylogenetic Trees/Animal Genes : TreeFamADGRA1
Homologs : HomoloGeneADGRA1
Homology/Alignments : Family Browser (UCSC)ADGRA1
Gene fusions - Rearrangements
Fusion : QuiverADGRA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADGRA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADGRA1
dbVarADGRA1
ClinVarADGRA1
MonarchADGRA1
1000_GenomesADGRA1 
Exome Variant ServerADGRA1
GNOMAD BrowserENSG00000197177
Varsome BrowserADGRA1
ACMGADGRA1 variants
VarityQ86SQ6
Genomic Variants (DGV)ADGRA1 [DGVbeta]
DECIPHERADGRA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADGRA1 
Mutations
ICGC Data PortalADGRA1 
TCGA Data PortalADGRA1 
Broad Tumor PortalADGRA1
OASIS PortalADGRA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADGRA1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DADGRA1
Mutations and Diseases : HGMDADGRA1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaADGRA1
DgiDB (Drug Gene Interaction Database)ADGRA1
DoCM (Curated mutations)ADGRA1
CIViC (Clinical Interpretations of Variants in Cancer)ADGRA1
Cancer3DADGRA1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612302   
Orphanet
DisGeNETADGRA1
MedgenADGRA1
Genetic Testing Registry ADGRA1
NextProtQ86SQ6 [Medical]
GENETestsADGRA1
Target ValidationADGRA1
Huge Navigator ADGRA1 [HugePedia]
ClinGenADGRA1
Clinical trials, drugs, therapy
MyCancerGenomeADGRA1
Protein Interactions : CTDADGRA1
Pharm GKB GenePA134910893
PharosQ86SQ6
Clinical trialADGRA1
Miscellaneous
canSAR (ICR)ADGRA1
HarmonizomeADGRA1
DataMed IndexADGRA1
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXADGRA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:41:34 CEST 2021

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