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ADGRB1 (adhesion G protein-coupled receptor B1)

Identity

Alias_namesBAI1
brain-specific angiogenesis inhibitor 1
Other aliasGDAIF
HGNC (Hugo) ADGRB1
LocusID (NCBI) 575
Atlas_Id 749
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 143545377 and ends at 143626368 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADGRB1 (8q24.3) / EXT1 (8q24.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADGRB1   943
Cards
Entrez_Gene (NCBI)ADGRB1  575  adhesion G protein-coupled receptor B1
AliasesBAI1; GDAIF
GeneCards (Weizmann)ADGRB1
Ensembl hg19 (Hinxton)ENSG00000181790 [Gene_View]  chr8:143545377-143626368 [Contig_View]  ADGRB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181790 [Gene_View]  chr8:143545377-143626368 [Contig_View]  ADGRB1 [Vega]
ICGC DataPortalENSG00000181790
TCGA cBioPortalADGRB1
AceView (NCBI)ADGRB1
Genatlas (Paris)ADGRB1
WikiGenes575
SOURCE (Princeton)ADGRB1
Genetics Home Reference (NIH)ADGRB1
Genomic and cartography
GoldenPath hg19 (UCSC)ADGRB1  -     chr8:143545377-143626368 +  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ADGRB1  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblADGRB1 - 8q24.3 [CytoView hg19]  ADGRB1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIADGRB1 [Mapview hg19]  ADGRB1 [Mapview hg38]
OMIM602682   
Gene and transcription
Genbank (Entrez)AB005297 AK123982 BC156200
RefSeq transcript (Entrez)NM_001702
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)ADGRB1
Cluster EST : UnigeneHs.194654 [ NCBI ]
CGAP (NCI)Hs.194654
Alternative Splicing GalleryENSG00000181790
Gene ExpressionADGRB1 [ NCBI-GEO ]   ADGRB1 [ EBI - ARRAY_EXPRESS ]   ADGRB1 [ SEEK ]   ADGRB1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADGRB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)575
GTEX Portal (Tissue expression)ADGRB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14514   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14514  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14514
Splice isoforms : SwissVarO14514
PhosPhoSitePlusO14514
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F2_3 (PS50227)    G_PROTEIN_RECEP_F2_4 (PS50261)    GPS (PS50221)    TSP1 (PS50092)   
Domains : Interpro (EBI)GAIN_dom_N    GPCR_2-like    GPCR_2_brain_angio_inhib    GPCR_2_extracellular_dom    GPCR_2_secretin-like    GPS    TSP1_rpt   
Domain families : Pfam (Sanger)7tm_2 (PF00002)    GAIN (PF16489)    GPS (PF01825)    HRM (PF02793)    TSP_1 (PF00090)   
Domain families : Pfam (NCBI)pfam00002    pfam16489    pfam01825    pfam02793    pfam00090   
Domain families : Smart (EMBL)GPS (SM00303)  HormR (SM00008)  TSP1 (SM00209)  
Conserved Domain (NCBI)ADGRB1
DMDM Disease mutations575
Blocks (Seattle)ADGRB1
SuperfamilyO14514
Human Protein AtlasENSG00000181790
Peptide AtlasO14514
HPRD04062
IPIIPI00022333   IPI00982974   
Protein Interaction databases
DIP (DOE-UCLA)O14514
IntAct (EBI)O14514
FunCoupENSG00000181790
BioGRIDADGRB1
STRING (EMBL)ADGRB1
ZODIACADGRB1
Ontologies - Pathways
QuickGOO14514
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  integral component of plasma membrane  cell-cell junction  cell adhesion  signal transduction  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  axonogenesis  peripheral nervous system development  negative regulation of cell proliferation  postsynaptic density  integral component of membrane  negative regulation of angiogenesis  positive regulation of synapse assembly  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  integral component of plasma membrane  cell-cell junction  cell adhesion  signal transduction  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  axonogenesis  peripheral nervous system development  negative regulation of cell proliferation  postsynaptic density  integral component of membrane  negative regulation of angiogenesis  positive regulation of synapse assembly  
NDEx NetworkADGRB1
Atlas of Cancer Signalling NetworkADGRB1
Wikipedia pathwaysADGRB1
Orthology - Evolution
OrthoDB575
GeneTree (enSembl)ENSG00000181790
Phylogenetic Trees/Animal Genes : TreeFamADGRB1
HOVERGENO14514
HOGENOMO14514
Homologs : HomoloGeneADGRB1
Homology/Alignments : Family Browser (UCSC)ADGRB1
Gene fusions - Rearrangements
Fusion : MitelmanADGRB1/EXT1 [8q24.3/8q24.11]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADGRB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADGRB1
dbVarADGRB1
ClinVarADGRB1
1000_GenomesADGRB1 
Exome Variant ServerADGRB1
ExAC (Exome Aggregation Consortium)ADGRB1 (select the gene name)
Genetic variants : HAPMAP575
Genomic Variants (DGV)ADGRB1 [DGVbeta]
DECIPHER (Syndromes)8:143545377-143626368  ENSG00000181790
CONAN: Copy Number AnalysisADGRB1 
Mutations
ICGC Data PortalADGRB1 
TCGA Data PortalADGRB1 
Broad Tumor PortalADGRB1
OASIS PortalADGRB1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADGRB1
BioMutasearch ADGRB1
DgiDB (Drug Gene Interaction Database)ADGRB1
DoCM (Curated mutations)ADGRB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADGRB1 (select a term)
intoGenADGRB1
Cancer3DADGRB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602682   
Orphanet
MedgenADGRB1
Genetic Testing Registry ADGRB1
NextProtO14514 [Medical]
TSGene575
GENETestsADGRB1
Huge Navigator ADGRB1 [HugePedia]
snp3D : Map Gene to Disease575
BioCentury BCIQADGRB1
ClinGenADGRB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD575
Chemical/Pharm GKB GenePA25247
Clinical trialADGRB1
Miscellaneous
canSAR (ICR)ADGRB1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADGRB1
EVEXADGRB1
GoPubMedADGRB1
iHOPADGRB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:51:41 CEST 2017

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