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ADGRE1 (adhesion G protein-coupled receptor E1)

Identity

Alias_namesTM7LN3
EMR1
egf-like module containing, mucin-like, hormone receptor-like sequence 1
egf-like module containing, mucin-like, hormone receptor-like 1
Other alias
HGNC (Hugo) ADGRE1
LocusID (NCBI) 2015
Atlas_Id 77639
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 6887560 and ends at 6940464 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ADGRE1   3336
Cards
Entrez_Gene (NCBI)ADGRE1  2015  adhesion G protein-coupled receptor E1
AliasesEMR1; TM7LN3
GeneCards (Weizmann)ADGRE1
Ensembl hg19 (Hinxton)ENSG00000174837 [Gene_View]  chr19:6887560-6940464 [Contig_View]  ADGRE1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174837 [Gene_View]  chr19:6887560-6940464 [Contig_View]  ADGRE1 [Vega]
ICGC DataPortalENSG00000174837
TCGA cBioPortalADGRE1
AceView (NCBI)ADGRE1
Genatlas (Paris)ADGRE1
WikiGenes2015
SOURCE (Princeton)ADGRE1
Genetics Home Reference (NIH)ADGRE1
Genomic and cartography
GoldenPath hg19 (UCSC)ADGRE1  -     chr19:6887560-6940464 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ADGRE1  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblADGRE1 - 19p13.3 [CytoView hg19]  ADGRE1 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIADGRE1 [Mapview hg19]  ADGRE1 [Mapview hg38]
OMIM600493   
Gene and transcription
Genbank (Entrez)AK131562 AK290401 AK291518 AK297003 AK297011
RefSeq transcript (Entrez)NM_001256252 NM_001256253 NM_001256254 NM_001256255 NM_001974
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)ADGRE1
Cluster EST : UnigeneHs.2375 [ NCBI ]
CGAP (NCI)Hs.2375
Alternative Splicing GalleryENSG00000174837
Gene ExpressionADGRE1 [ NCBI-GEO ]   ADGRE1 [ EBI - ARRAY_EXPRESS ]   ADGRE1 [ SEEK ]   ADGRE1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADGRE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2015
GTEX Portal (Tissue expression)ADGRE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14246   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14246  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14246
Splice isoforms : SwissVarQ14246
PhosPhoSitePlusQ14246
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_4 (PS50261)    GPS (PS50221)   
Domains : Interpro (EBI)cEGF    EG-like_dom    EGF-like_Ca-bd_dom    EGF-like_CS    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    GPCR_2-like    GPCR_2_EMR1_rcpt    GPCR_2_secretin-like    GPCR_2_secretin-like_CS    GPS    Growth_fac_rcpt_N_dom   
Domain families : Pfam (Sanger)7tm_2 (PF00002)    cEGF (PF12662)    EGF_CA (PF07645)    GPS (PF01825)   
Domain families : Pfam (NCBI)pfam00002    pfam12662    pfam07645    pfam01825   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  GPS (SM00303)  
Conserved Domain (NCBI)ADGRE1
DMDM Disease mutations2015
Blocks (Seattle)ADGRE1
SuperfamilyQ14246
Human Protein AtlasENSG00000174837
Peptide AtlasQ14246
HPRD02733
IPIIPI00409744   IPI01018981   IPI00922168   IPI00940086   IPI00441994   
Protein Interaction databases
DIP (DOE-UCLA)Q14246
IntAct (EBI)Q14246
FunCoupENSG00000174837
BioGRIDADGRE1
STRING (EMBL)ADGRE1
ZODIACADGRE1
Ontologies - Pathways
QuickGOQ14246
Ontology : AmiGOG-protein coupled receptor activity  calcium ion binding  integral component of plasma membrane  cell adhesion  G-protein coupled receptor signaling pathway  external side of plasma membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  calcium ion binding  integral component of plasma membrane  cell adhesion  G-protein coupled receptor signaling pathway  external side of plasma membrane  
NDEx NetworkADGRE1
Atlas of Cancer Signalling NetworkADGRE1
Wikipedia pathwaysADGRE1
Orthology - Evolution
OrthoDB2015
GeneTree (enSembl)ENSG00000174837
Phylogenetic Trees/Animal Genes : TreeFamADGRE1
HOVERGENQ14246
HOGENOMQ14246
Homologs : HomoloGeneADGRE1
Homology/Alignments : Family Browser (UCSC)ADGRE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADGRE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADGRE1
dbVarADGRE1
ClinVarADGRE1
1000_GenomesADGRE1 
Exome Variant ServerADGRE1
ExAC (Exome Aggregation Consortium)ADGRE1 (select the gene name)
Genetic variants : HAPMAP2015
Genomic Variants (DGV)ADGRE1 [DGVbeta]
DECIPHER (Syndromes)19:6887560-6940464  ENSG00000174837
CONAN: Copy Number AnalysisADGRE1 
Mutations
ICGC Data PortalADGRE1 
TCGA Data PortalADGRE1 
Broad Tumor PortalADGRE1
OASIS PortalADGRE1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADGRE1
BioMutasearch ADGRE1
DgiDB (Drug Gene Interaction Database)ADGRE1
DoCM (Curated mutations)ADGRE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADGRE1 (select a term)
intoGenADGRE1
Cancer3DADGRE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600493   
Orphanet
MedgenADGRE1
Genetic Testing Registry ADGRE1
NextProtQ14246 [Medical]
TSGene2015
GENETestsADGRE1
Huge Navigator ADGRE1 [HugePedia]
snp3D : Map Gene to Disease2015
BioCentury BCIQADGRE1
ClinGenADGRE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2015
Chemical/Pharm GKB GenePA27773
Clinical trialADGRE1
Miscellaneous
canSAR (ICR)ADGRE1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADGRE1
EVEXADGRE1
GoPubMedADGRE1
iHOPADGRE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:46 CET 2017

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