Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ADGRE3 (adhesion G protein-coupled receptor E3)

Identity

Alias_namesEMR3
egf-like module containing
Other alias
HGNC (Hugo) ADGRE3
LocusID (NCBI) 84658
Atlas_Id 53952
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14619117 and ends at 14674918 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADGRE3   23647
Cards
Entrez_Gene (NCBI)ADGRE3  84658  adhesion G protein-coupled receptor E3
AliasesEMR3
GeneCards (Weizmann)ADGRE3
Ensembl hg19 (Hinxton)ENSG00000131355 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131355 [Gene_View]  chr19:14619117-14674918 [Contig_View]  ADGRE3 [Vega]
ICGC DataPortalENSG00000131355
TCGA cBioPortalADGRE3
AceView (NCBI)ADGRE3
Genatlas (Paris)ADGRE3
WikiGenes84658
SOURCE (Princeton)ADGRE3
Genetics Home Reference (NIH)ADGRE3
Genomic and cartography
GoldenPath hg38 (UCSC)ADGRE3  -     chr19:14619117-14674918 -  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADGRE3  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblADGRE3 - 19p13.12 [CytoView hg19]  ADGRE3 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBIADGRE3 [Mapview hg19]  ADGRE3 [Mapview hg38]
OMIM606101   
Gene and transcription
Genbank (Entrez)AF239764 AK290909 AK298653 AL832663 AW450761
RefSeq transcript (Entrez)NM_001289158 NM_001289159 NM_032571 NM_152939
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADGRE3
Cluster EST : UnigeneHs.658712 [ NCBI ]
CGAP (NCI)Hs.658712
Alternative Splicing GalleryENSG00000131355
Gene ExpressionADGRE3 [ NCBI-GEO ]   ADGRE3 [ EBI - ARRAY_EXPRESS ]   ADGRE3 [ SEEK ]   ADGRE3 [ MEM ]
Gene Expression Viewer (FireBrowse)ADGRE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84658
GTEX Portal (Tissue expression)ADGRE3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY15
Splice isoforms : SwissVarQ9BY15
PhosPhoSitePlusQ9BY15
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_3 (PS50026)    EGF_CA (PS01187)    G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_4 (PS50261)    GPS (PS50221)   
Domains : Interpro (EBI)EGF-like_Ca-bd_dom    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    GAIN_dom_N    GPCR_2-like    GPCR_2_EMR1-like_rcpt    GPCR_2_secretin-like    GPCR_2_secretin-like_CS    GPS    Growth_fac_rcpt_   
Domain families : Pfam (Sanger)7tm_2 (PF00002)    EGF_CA (PF07645)    GAIN (PF16489)    GPS (PF01825)   
Domain families : Pfam (NCBI)pfam00002    pfam07645    pfam16489    pfam01825   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  GPS (SM00303)  
Conserved Domain (NCBI)ADGRE3
DMDM Disease mutations84658
Blocks (Seattle)ADGRE3
SuperfamilyQ9BY15
Human Protein AtlasENSG00000131355
Peptide AtlasQ9BY15
HPRD07309
IPIIPI00641365   IPI00398872   IPI00978675   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY15
IntAct (EBI)Q9BY15
FunCoupENSG00000131355
BioGRIDADGRE3
STRING (EMBL)ADGRE3
ZODIACADGRE3
Ontologies - Pathways
QuickGOQ9BY15
Ontology : AmiGOG-protein coupled receptor activity  calcium ion binding  extracellular region  plasma membrane  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  integral component of membrane  secretory granule membrane  neutrophil degranulation  ficolin-1-rich granule membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  calcium ion binding  extracellular region  plasma membrane  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  integral component of membrane  secretory granule membrane  neutrophil degranulation  ficolin-1-rich granule membrane  
NDEx NetworkADGRE3
Atlas of Cancer Signalling NetworkADGRE3
Wikipedia pathwaysADGRE3
Orthology - Evolution
OrthoDB84658
GeneTree (enSembl)ENSG00000131355
Phylogenetic Trees/Animal Genes : TreeFamADGRE3
HOVERGENQ9BY15
HOGENOMQ9BY15
Homologs : HomoloGeneADGRE3
Homology/Alignments : Family Browser (UCSC)ADGRE3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADGRE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADGRE3
dbVarADGRE3
ClinVarADGRE3
1000_GenomesADGRE3 
Exome Variant ServerADGRE3
ExAC (Exome Aggregation Consortium)ADGRE3 (select the gene name)
Genetic variants : HAPMAP84658
Genomic Variants (DGV)ADGRE3 [DGVbeta]
DECIPHERADGRE3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADGRE3 
Mutations
ICGC Data PortalADGRE3 
TCGA Data PortalADGRE3 
Broad Tumor PortalADGRE3
OASIS PortalADGRE3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADGRE3
BioMutasearch ADGRE3
DgiDB (Drug Gene Interaction Database)ADGRE3
DoCM (Curated mutations)ADGRE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADGRE3 (select a term)
intoGenADGRE3
Cancer3DADGRE3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606101   
Orphanet
MedgenADGRE3
Genetic Testing Registry ADGRE3
NextProtQ9BY15 [Medical]
TSGene84658
GENETestsADGRE3
Target ValidationADGRE3
Huge Navigator ADGRE3 [HugePedia]
snp3D : Map Gene to Disease84658
BioCentury BCIQADGRE3
ClinGenADGRE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84658
Chemical/Pharm GKB GenePA134956879
Clinical trialADGRE3
Miscellaneous
canSAR (ICR)ADGRE3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADGRE3
EVEXADGRE3
GoPubMedADGRE3
iHOPADGRE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:54:28 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.