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ADGRE4P (adhesion G protein-coupled receptor E4, pseudogene)

Identity

Alias_namesGPR127
EMR4
EMR4P
G protein-coupled receptor 127
egf-like module containing, mucin-like, hormone receptor-like 4
egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene
Alias_symbol (synonym)PGR16
Other aliasFIRE
HGNC (Hugo) ADGRE4P
LocusID (NCBI) 326342
Atlas_Id 77277
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 6952500 and ends at 6990846 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADGRE4P   19240
Cards
Entrez_Gene (NCBI)ADGRE4P  326342  adhesion G protein-coupled receptor E4, pseudogene
AliasesEMR4; EMR4P; FIRE; GPR127; 
PGR16
GeneCards (Weizmann)ADGRE4P
Ensembl hg19 (Hinxton)ENSG00000268758 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268758 [Gene_View]  chr19:6952500-6990846 [Contig_View]  ADGRE4P [Vega]
ICGC DataPortalENSG00000268758
TCGA cBioPortalADGRE4P
AceView (NCBI)ADGRE4P
Genatlas (Paris)ADGRE4P
WikiGenes326342
SOURCE (Princeton)ADGRE4P
Genetics Home Reference (NIH)ADGRE4P
Genomic and cartography
GoldenPath hg38 (UCSC)ADGRE4P  -     chr19:6952500-6990846 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADGRE4P  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblADGRE4P - 19p13.2 [CytoView hg19]  ADGRE4P - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIADGRE4P [Mapview hg19]  ADGRE4P [Mapview hg38]
OMIM612305   
Gene and transcription
Genbank (Entrez)AF489700 AY181245 AY255550 BC152958
RefSeq transcript (Entrez)NM_001080498
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADGRE4P
Cluster EST : UnigeneHs.688043 [ NCBI ]
CGAP (NCI)Hs.688043
Alternative Splicing GalleryENSG00000268758
Gene ExpressionADGRE4P [ NCBI-GEO ]   ADGRE4P [ EBI - ARRAY_EXPRESS ]   ADGRE4P [ SEEK ]   ADGRE4P [ MEM ]
Gene Expression Viewer (FireBrowse)ADGRE4P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)326342
GTEX Portal (Tissue expression)ADGRE4P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SQ3
Splice isoforms : SwissVarQ86SQ3
PhosPhoSitePlusQ86SQ3
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_3 (PS50026)    EGF_CA (PS01187)    G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_4 (PS50261)    GPS (PS50221)   
Domains : Interpro (EBI)EGF-like_Ca-bd_dom    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    GPCR_2-like    GPCR_2_EMR1-like_rcpt    GPCR_2_secretin-like    GPCR_2_secretin-like_CS    GPS   
Domain families : Pfam (Sanger)7tm_2 (PF00002)    EGF_CA (PF07645)    GPS (PF01825)   
Domain families : Pfam (NCBI)pfam00002    pfam07645    pfam01825   
Domain families : Smart (EMBL)EGF_CA (SM00179)  GPS (SM00303)  
Conserved Domain (NCBI)ADGRE4P
DMDM Disease mutations326342
Blocks (Seattle)ADGRE4P
SuperfamilyQ86SQ3
Human Protein AtlasENSG00000268758
Peptide AtlasQ86SQ3
IPIIPI00742200   IPI00400813   
Protein Interaction databases
DIP (DOE-UCLA)Q86SQ3
IntAct (EBI)Q86SQ3
FunCoupENSG00000268758
BioGRIDADGRE4P
STRING (EMBL)ADGRE4P
ZODIACADGRE4P
Ontologies - Pathways
QuickGOQ86SQ3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkADGRE4P
Atlas of Cancer Signalling NetworkADGRE4P
Wikipedia pathwaysADGRE4P
Orthology - Evolution
OrthoDB326342
GeneTree (enSembl)ENSG00000268758
Phylogenetic Trees/Animal Genes : TreeFamADGRE4P
HOVERGENQ86SQ3
HOGENOMQ86SQ3
Homologs : HomoloGeneADGRE4P
Homology/Alignments : Family Browser (UCSC)ADGRE4P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADGRE4P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADGRE4P
dbVarADGRE4P
ClinVarADGRE4P
1000_GenomesADGRE4P 
Exome Variant ServerADGRE4P
ExAC (Exome Aggregation Consortium)ADGRE4P (select the gene name)
Genetic variants : HAPMAP326342
Genomic Variants (DGV)ADGRE4P [DGVbeta]
DECIPHERADGRE4P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADGRE4P 
Mutations
ICGC Data PortalADGRE4P 
TCGA Data PortalADGRE4P 
Broad Tumor PortalADGRE4P
OASIS PortalADGRE4P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADGRE4P
BioMutasearch ADGRE4P
DgiDB (Drug Gene Interaction Database)ADGRE4P
DoCM (Curated mutations)ADGRE4P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADGRE4P (select a term)
intoGenADGRE4P
Cancer3DADGRE4P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612305   
Orphanet
MedgenADGRE4P
Genetic Testing Registry ADGRE4P
NextProtQ86SQ3 [Medical]
TSGene326342
GENETestsADGRE4P
Target ValidationADGRE4P
Huge Navigator ADGRE4P [HugePedia]
snp3D : Map Gene to Disease326342
BioCentury BCIQADGRE4P
ClinGenADGRE4P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD326342
Chemical/Pharm GKB GenePA134948805
Clinical trialADGRE4P
Miscellaneous
canSAR (ICR)ADGRE4P (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADGRE4P
EVEXADGRE4P
GoPubMedADGRE4P
iHOPADGRE4P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:37:33 CEST 2017

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