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ADGRV1 (adhesion G protein-coupled receptor V1)

Identity

Alias_namesUSH2C
MASS1
GPR98
monogenic, audiogenic seizure susceptibility 1 homolog (mouse)
G protein-coupled receptor 98
Alias_symbol (synonym)DKFZp761P0710
KIAA0686
FEB4
VLGR1
Other aliasUSH2B
VLGR1b
HGNC (Hugo) ADGRV1
LocusID (NCBI) 84059
Atlas_Id 55517
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 89854617 and ends at 90460033 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADGRV1 (5q14.3) / ATR (3q23)ADGRV1 (5q14.3) / FBXO34 (14q22.3)GCN1 (12q24.23) / ADGRV1 (5q14.3)
PJA2 (5q21.3) / ADGRV1 (5q14.3)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ADGRV1   17416
LRG (Locus Reference Genomic)LRG_1095
Cards
Entrez_Gene (NCBI)ADGRV1  84059  adhesion G protein-coupled receptor V1
AliasesFEB4; GPR98; MASS1; USH2B; 
USH2C; VLGR1; VLGR1b
GeneCards (Weizmann)ADGRV1
Ensembl hg19 (Hinxton)ENSG00000164199 [Gene_View]  chr5:89854617-90460033 [Contig_View]  ADGRV1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164199 [Gene_View]  chr5:89854617-90460033 [Contig_View]  ADGRV1 [Vega]
ICGC DataPortalENSG00000164199
TCGA cBioPortalADGRV1
AceView (NCBI)ADGRV1
Genatlas (Paris)ADGRV1
WikiGenes84059
SOURCE (Princeton)ADGRV1
Genetics Home Reference (NIH)ADGRV1
Genomic and cartography
GoldenPath hg19 (UCSC)ADGRV1  -     chr5:89854617-90460033 +  5q14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ADGRV1  -     5q14.3   [Description]    (hg38-Dec_2013)
EnsemblADGRV1 - 5q14.3 [CytoView hg19]  ADGRV1 - 5q14.3 [CytoView hg38]
Mapping of homologs : NCBIADGRV1 [Mapview hg19]  ADGRV1 [Mapview hg38]
OMIM602851   604352   605472   
Gene and transcription
Genbank (Entrez)AB014586 AB075823 AF055084 AF435925 AK024416
RefSeq transcript (Entrez)NM_032119
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_007083 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)ADGRV1
Cluster EST : UnigeneHs.591777 [ NCBI ]
CGAP (NCI)Hs.591777
Alternative Splicing GalleryENSG00000164199
Gene ExpressionADGRV1 [ NCBI-GEO ]   ADGRV1 [ EBI - ARRAY_EXPRESS ]   ADGRV1 [ SEEK ]   ADGRV1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADGRV1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84059
GTEX Portal (Tissue expression)ADGRV1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXG9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXG9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXG9
Splice isoforms : SwissVarQ8WXG9
PhosPhoSitePlusQ8WXG9
Domaine pattern : Prosite (Expaxy)EAR (PS50912)    G_PROTEIN_RECEP_F2_4 (PS50261)    GPS (PS50221)   
Domains : Interpro (EBI)Calx_beta    ConA-like_dom    EAR    EPTP    GPCR_2-like    GPCR_2_secretin-like    GPR98    GPS   
Domain families : Pfam (Sanger)7tm_2 (PF00002)    Calx-beta (PF03160)    EPTP (PF03736)   
Domain families : Pfam (NCBI)pfam00002    pfam03160    pfam03736   
Domain families : Smart (EMBL)Calx_beta (SM00237)  GPS (SM00303)  
Conserved Domain (NCBI)ADGRV1
DMDM Disease mutations84059
Blocks (Seattle)ADGRV1
SuperfamilyQ8WXG9
Human Protein AtlasENSG00000164199
Peptide AtlasQ8WXG9
HPRD09111
IPIIPI00165934   IPI00743628   IPI00902954   IPI00902765   IPI00815660   IPI00749231   IPI00967734   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXG9
IntAct (EBI)Q8WXG9
FunCoupENSG00000164199
BioGRIDADGRV1
STRING (EMBL)ADGRV1
ZODIACADGRV1
Ontologies - Pathways
QuickGOQ8WXG9
Ontology : AmiGOG-protein coupled receptor activity  calcium ion binding  protein binding  cytoplasm  plasma membrane  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  nervous system development  visual perception  sensory perception of sound  cell surface  membrane  integral component of membrane  single organismal cell-cell adhesion  stereocilium  receptor complex  synapse  photoreceptor cell maintenance  maintenance of organ identity  neurological system process  sensory perception of light stimulus  extracellular exosome  
Ontology : EGO-EBIG-protein coupled receptor activity  calcium ion binding  protein binding  cytoplasm  plasma membrane  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  nervous system development  visual perception  sensory perception of sound  cell surface  membrane  integral component of membrane  single organismal cell-cell adhesion  stereocilium  receptor complex  synapse  photoreceptor cell maintenance  maintenance of organ identity  neurological system process  sensory perception of light stimulus  extracellular exosome  
NDEx NetworkADGRV1
Atlas of Cancer Signalling NetworkADGRV1
Wikipedia pathwaysADGRV1
Orthology - Evolution
OrthoDB84059
GeneTree (enSembl)ENSG00000164199
Phylogenetic Trees/Animal Genes : TreeFamADGRV1
HOVERGENQ8WXG9
HOGENOMQ8WXG9
Homologs : HomoloGeneADGRV1
Homology/Alignments : Family Browser (UCSC)ADGRV1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADGRV1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADGRV1
dbVarADGRV1
ClinVarADGRV1
1000_GenomesADGRV1 
Exome Variant ServerADGRV1
ExAC (Exome Aggregation Consortium)ADGRV1 (select the gene name)
Genetic variants : HAPMAP84059
Genomic Variants (DGV)ADGRV1 [DGVbeta]
DECIPHER (Syndromes)5:89854617-90460033  ENSG00000164199
CONAN: Copy Number AnalysisADGRV1 
Mutations
ICGC Data PortalADGRV1 
TCGA Data PortalADGRV1 
Broad Tumor PortalADGRV1
OASIS PortalADGRV1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADGRV1
BioMutasearch ADGRV1
DgiDB (Drug Gene Interaction Database)ADGRV1
DoCM (Curated mutations)ADGRV1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADGRV1 (select a term)
intoGenADGRV1
Cancer3DADGRV1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602851    604352    605472   
Orphanet19168   
MedgenADGRV1
Genetic Testing Registry ADGRV1
NextProtQ8WXG9 [Medical]
TSGene84059
GENETestsADGRV1
Huge Navigator ADGRV1 [HugePedia]
snp3D : Map Gene to Disease84059
BioCentury BCIQADGRV1
ClinGenADGRV1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84059
Chemical/Pharm GKB GenePA134960779
Clinical trialADGRV1
Miscellaneous
canSAR (ICR)ADGRV1 (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADGRV1
EVEXADGRV1
GoPubMedADGRV1
iHOPADGRV1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:55:02 CET 2017

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