Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ADH1B (alcohol dehydrogenase 1B (class I), beta polypeptide)

Identity

Alias (NCBI)ADH2
HEL-S-117
HGNC (Hugo) ADH1B
HGNC Previous nameADH2
LocusID (NCBI) 125
Atlas_Id 582
Location 4q23  [Link to chromosome band 4q23]
Location_base_pair Starts at 99304971 and ends at 99321401 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ADH1B   250
Cards
Entrez_Gene (NCBI)ADH1B  125  alcohol dehydrogenase 1B (class I), beta polypeptide
AliasesADH2; HEL-S-117
GeneCards (Weizmann)ADH1B
Ensembl hg19 (Hinxton)ENSG00000196616 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196616 [Gene_View]  ENSG00000196616 [Sequence]  chr4:99304971-99321401 [Contig_View]  ADH1B [Vega]
ICGC DataPortalENSG00000196616
TCGA cBioPortalADH1B
AceView (NCBI)ADH1B
Genatlas (Paris)ADH1B
WikiGenes125
SOURCE (Princeton)ADH1B
Genetics Home Reference (NIH)ADH1B
Genomic and cartography
GoldenPath hg38 (UCSC)ADH1B  -     chr4:99304971-99321401 -  4q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADH1B  -     4q23   [Description]    (hg19-Feb_2009)
GoldenPathADH1B - 4q23 [CytoView hg19]  ADH1B - 4q23 [CytoView hg38]
ImmunoBaseENSG00000196616
genome Data Viewer NCBIADH1B [Mapview hg19]  
OMIM103720   103780   
Gene and transcription
Genbank (Entrez)AF153821 AI702614 AK299409 AK301018 AK303945
RefSeq transcript (Entrez)NM_000668 NM_001286650
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADH1B
Alternative Splicing GalleryENSG00000196616
Gene ExpressionADH1B [ NCBI-GEO ]   ADH1B [ EBI - ARRAY_EXPRESS ]   ADH1B [ SEEK ]   ADH1B [ MEM ]
Gene Expression Viewer (FireBrowse)ADH1B [ Firebrowse - Broad ]
GenevisibleExpression of ADH1B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125
GTEX Portal (Tissue expression)ADH1B
Human Protein AtlasENSG00000196616-ADH1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP00325   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP00325  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP00325
Splice isoforms : SwissVarP00325
PhosPhoSitePlusP00325
Domaine pattern : Prosite (Expaxy)ADH_ZINC (PS00059)   
Domains : Interpro (EBI)ADH_C    ADH_N    ADH_Zn_CS    GroES-like_sf    NAD(P)-bd_dom_sf    PKS_ER   
Domain families : Pfam (Sanger)ADH_N (PF08240)    ADH_zinc_N (PF00107)   
Domain families : Pfam (NCBI)pfam08240    pfam00107   
Domain families : Smart (EMBL)PKS_ER (SM00829)  
Conserved Domain (NCBI)ADH1B
DMDM Disease mutations125
Blocks (Seattle)ADH1B
PDB (RSDB)1DEH    1HDX    1HDY    1HDZ    1HSZ    1HTB    1U3U    1U3V    3HUD   
PDB Europe1DEH    1HDX    1HDY    1HDZ    1HSZ    1HTB    1U3U    1U3V    3HUD   
PDB (PDBSum)1DEH    1HDX    1HDY    1HDZ    1HSZ    1HTB    1U3U    1U3V    3HUD   
PDB (IMB)1DEH    1HDX    1HDY    1HDZ    1HSZ    1HTB    1U3U    1U3V    3HUD   
Structural Biology KnowledgeBase1DEH    1HDX    1HDY    1HDZ    1HSZ    1HTB    1U3U    1U3V    3HUD   
SCOP (Structural Classification of Proteins)1DEH    1HDX    1HDY    1HDZ    1HSZ    1HTB    1U3U    1U3V    3HUD   
CATH (Classification of proteins structures)1DEH    1HDX    1HDY    1HDZ    1HSZ    1HTB    1U3U    1U3V    3HUD   
SuperfamilyP00325
Human Protein Atlas [tissue]ENSG00000196616-ADH1B [tissue]
Peptide AtlasP00325
HPRD00065
IPIIPI00473031   IPI00872991   IPI01018979   IPI00965164   
Protein Interaction databases
DIP (DOE-UCLA)P00325
IntAct (EBI)P00325
FunCoupENSG00000196616
BioGRIDADH1B
STRING (EMBL)ADH1B
ZODIACADH1B
Ontologies - Pathways
QuickGOP00325
Ontology : AmiGOretinoid metabolic process  alcohol dehydrogenase activity, zinc-dependent  alcohol dehydrogenase activity, zinc-dependent  retinol dehydrogenase activity  retinol dehydrogenase activity  nucleoplasm  cytosol  cytosol  cytosol  plasma membrane  ethanol oxidation  ethanol oxidation  ethanol oxidation  zinc ion binding  zinc ion binding  retinol metabolic process  retinoic acid metabolic process  
Ontology : EGO-EBIretinoid metabolic process  alcohol dehydrogenase activity, zinc-dependent  alcohol dehydrogenase activity, zinc-dependent  retinol dehydrogenase activity  retinol dehydrogenase activity  nucleoplasm  cytosol  cytosol  cytosol  plasma membrane  ethanol oxidation  ethanol oxidation  ethanol oxidation  zinc ion binding  zinc ion binding  retinol metabolic process  retinoic acid metabolic process  
Pathways : KEGGGlycolysis / Gluconeogenesis    Fatty acid degradation    Tyrosine metabolism    Retinol metabolism    Metabolism of xenobiotics by cytochrome P450    Drug metabolism - cytochrome P450    Chemical carcinogenesis   
NDEx NetworkADH1B
Atlas of Cancer Signalling NetworkADH1B
Wikipedia pathwaysADH1B
Orthology - Evolution
OrthoDB125
GeneTree (enSembl)ENSG00000196616
Phylogenetic Trees/Animal Genes : TreeFamADH1B
HOGENOMP00325
Homologs : HomoloGeneADH1B
Homology/Alignments : Family Browser (UCSC)ADH1B
Gene fusions - Rearrangements
Fusion : QuiverADH1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADH1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADH1B
dbVarADH1B
ClinVarADH1B
MonarchADH1B
1000_GenomesADH1B 
Exome Variant ServerADH1B
GNOMAD BrowserENSG00000196616
Varsome BrowserADH1B
Genetic variants : HAPMAP125
Genomic Variants (DGV)ADH1B [DGVbeta]
DECIPHERADH1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADH1B 
Mutations
ICGC Data PortalADH1B 
TCGA Data PortalADH1B 
Broad Tumor PortalADH1B
OASIS PortalADH1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADH1B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DADH1B
Mutations and Diseases : HGMDADH1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADH1B
DgiDB (Drug Gene Interaction Database)ADH1B
DoCM (Curated mutations)ADH1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADH1B (select a term)
intoGenADH1B
Cancer3DADH1B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM103720    103780   
Orphanet
DisGeNETADH1B
MedgenADH1B
Genetic Testing Registry ADH1B
NextProtP00325 [Medical]
TSGene125
GENETestsADH1B
Target ValidationADH1B
Huge Navigator ADH1B [HugePedia]
snp3D : Map Gene to Disease125
BioCentury BCIQADH1B
ClinGenADH1B
Clinical trials, drugs, therapy
Protein Interactions : CTD125
Pharm GKB GenePA24571
Pharm GKB PathwaysPA165816736   PA166104634   PA2035   PA2038   
Clinical trialADH1B
Miscellaneous
canSAR (ICR)ADH1B (select the gene name)
HarmonizomeADH1B
DataMed IndexADH1B
Probes
Litterature
PubMed385 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADH1B
EVEXADH1B
GoPubMedADH1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 14 14:00:39 CEST 2020
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