Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ADH1C (alcohol dehydrogenase 1C (class I), gamma polypeptide)

Identity

Alias_namesADH3
Other alias
HGNC (Hugo) ADH1C
LocusID (NCBI) 126
Atlas_Id 53084
Location 4q23  [Link to chromosome band 4q23]
Location_base_pair Starts at 99336492 and ends at 99353045 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADH1C   251
Cards
Entrez_Gene (NCBI)ADH1C  126  alcohol dehydrogenase 1C (class I), gamma polypeptide
AliasesADH3
GeneCards (Weizmann)ADH1C
Ensembl hg19 (Hinxton)ENSG00000248144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248144 [Gene_View]  chr4:99336492-99353045 [Contig_View]  ADH1C [Vega]
ICGC DataPortalENSG00000248144
TCGA cBioPortalADH1C
AceView (NCBI)ADH1C
Genatlas (Paris)ADH1C
WikiGenes126
SOURCE (Princeton)ADH1C
Genetics Home Reference (NIH)ADH1C
Genomic and cartography
GoldenPath hg38 (UCSC)ADH1C  -     chr4:99336492-99353045 -  4q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADH1C  -     4q23   [Description]    (hg19-Feb_2009)
EnsemblADH1C - 4q23 [CytoView hg19]  ADH1C - 4q23 [CytoView hg38]
Mapping of homologs : NCBIADH1C [Mapview hg19]  ADH1C [Mapview hg38]
OMIM103730   103780   168600   
Gene and transcription
Genbank (Entrez)BC062476 BC066227 BC066228 BC067419 BC067420
RefSeq transcript (Entrez)NM_000669
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADH1C
Cluster EST : UnigeneHs.654537 [ NCBI ]
CGAP (NCI)Hs.654537
Alternative Splicing GalleryENSG00000248144
Gene ExpressionADH1C [ NCBI-GEO ]   ADH1C [ EBI - ARRAY_EXPRESS ]   ADH1C [ SEEK ]   ADH1C [ MEM ]
Gene Expression Viewer (FireBrowse)ADH1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126
GTEX Portal (Tissue expression)ADH1C
Protein : pattern, domain, 3D structure
UniProt/SwissProtP00326   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP00326  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP00326
Splice isoforms : SwissVarP00326
Catalytic activity : Enzyme1.1.1.1 [ Enzyme-Expasy ]   1.1.1.11.1.1.1 [ IntEnz-EBI ]   1.1.1.1 [ BRENDA ]   1.1.1.1 [ KEGG ]   
PhosPhoSitePlusP00326
Domaine pattern : Prosite (Expaxy)ADH_ZINC (PS00059)   
Domains : Interpro (EBI)ADH_C    ADH_N    ADH_Zn_CS    GroES-like    NAD(P)-bd_dom    PKS_ER   
Domain families : Pfam (Sanger)ADH_N (PF08240)    ADH_zinc_N (PF00107)   
Domain families : Pfam (NCBI)pfam08240    pfam00107   
Domain families : Smart (EMBL)PKS_ER (SM00829)  
Conserved Domain (NCBI)ADH1C
DMDM Disease mutations126
Blocks (Seattle)ADH1C
PDB (SRS)1DDA    1HT0    1U3W   
PDB (PDBSum)1DDA    1HT0    1U3W   
PDB (IMB)1DDA    1HT0    1U3W   
PDB (RSDB)1DDA    1HT0    1U3W   
Structural Biology KnowledgeBase1DDA    1HT0    1U3W   
SCOP (Structural Classification of Proteins)1DDA    1HT0    1U3W   
CATH (Classification of proteins structures)1DDA    1HT0    1U3W   
SuperfamilyP00326
Human Protein AtlasENSG00000248144
Peptide AtlasP00326
HPRD00066
IPIIPI00465343   
Protein Interaction databases
DIP (DOE-UCLA)P00326
IntAct (EBI)P00326
FunCoupENSG00000248144
BioGRIDADH1C
STRING (EMBL)ADH1C
ZODIACADH1C
Ontologies - Pathways
QuickGOP00326
Ontology : AmiGOalcohol dehydrogenase (NAD) activity  alcohol dehydrogenase activity, zinc-dependent  retinol dehydrogenase activity  nucleoplasm  cytosol  cytosol  plasma membrane  ethanol oxidation  ethanol oxidation  zinc ion binding  
Ontology : EGO-EBIalcohol dehydrogenase (NAD) activity  alcohol dehydrogenase activity, zinc-dependent  retinol dehydrogenase activity  nucleoplasm  cytosol  cytosol  plasma membrane  ethanol oxidation  ethanol oxidation  zinc ion binding  
Pathways : KEGG   
NDEx NetworkADH1C
Atlas of Cancer Signalling NetworkADH1C
Wikipedia pathwaysADH1C
Orthology - Evolution
OrthoDB126
GeneTree (enSembl)ENSG00000248144
Phylogenetic Trees/Animal Genes : TreeFamADH1C
HOVERGENP00326
HOGENOMP00326
Homologs : HomoloGeneADH1C
Homology/Alignments : Family Browser (UCSC)ADH1C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADH1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADH1C
dbVarADH1C
ClinVarADH1C
1000_GenomesADH1C 
Exome Variant ServerADH1C
ExAC (Exome Aggregation Consortium)ADH1C (select the gene name)
Genetic variants : HAPMAP126
Genomic Variants (DGV)ADH1C [DGVbeta]
DECIPHERADH1C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADH1C 
Mutations
ICGC Data PortalADH1C 
TCGA Data PortalADH1C 
Broad Tumor PortalADH1C
OASIS PortalADH1C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADH1C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADH1C
DgiDB (Drug Gene Interaction Database)ADH1C
DoCM (Curated mutations)ADH1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADH1C (select a term)
intoGenADH1C
Cancer3DADH1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM103730    103780    168600   
Orphanet
MedgenADH1C
Genetic Testing Registry ADH1C
NextProtP00326 [Medical]
TSGene126
GENETestsADH1C
Target ValidationADH1C
Huge Navigator ADH1C [HugePedia]
snp3D : Map Gene to Disease126
BioCentury BCIQADH1C
ClinGenADH1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126
Chemical/Pharm GKB GenePA24572
Clinical trialADH1C
Miscellaneous
canSAR (ICR)ADH1C (select the gene name)
Probes
Litterature
PubMed211 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADH1C
EVEXADH1C
GoPubMedADH1C
iHOPADH1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:46:16 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.