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ADIRF (adipogenesis regulatory factor)

Identity

Alias_namesC10orf116
chromosome 10 open reading frame 116
Alias_symbol (synonym)APM2
AFRO
Other aliasapM-2
HGNC (Hugo) ADIRF
LocusID (NCBI) 10974
Atlas_Id 51131
Location 10q23.2  [Link to chromosome band 10q23]
Location_base_pair Starts at 86968431 and ends at 86970909 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADIRF   24043
Cards
Entrez_Gene (NCBI)ADIRF  10974  adipogenesis regulatory factor
AliasesAFRO; APM2; C10orf116; apM-2
GeneCards (Weizmann)ADIRF
Ensembl hg19 (Hinxton)ENSG00000148671 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148671 [Gene_View]  chr10:86968431-86970909 [Contig_View]  ADIRF [Vega]
ICGC DataPortalENSG00000148671
TCGA cBioPortalADIRF
AceView (NCBI)ADIRF
Genatlas (Paris)ADIRF
WikiGenes10974
SOURCE (Princeton)ADIRF
Genetics Home Reference (NIH)ADIRF
Genomic and cartography
GoldenPath hg38 (UCSC)ADIRF  -     chr10:86968431-86970909 +  10q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADIRF  -     10q23.2   [Description]    (hg19-Feb_2009)
EnsemblADIRF - 10q23.2 [CytoView hg19]  ADIRF - 10q23.2 [CytoView hg38]
Mapping of homologs : NCBIADIRF [Mapview hg19]  ADIRF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI401530 AK312031 BC004471 BM789611 BM850559
RefSeq transcript (Entrez)NM_006829
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADIRF
Cluster EST : UnigeneHs.714477 [ NCBI ]
CGAP (NCI)Hs.714477
Alternative Splicing GalleryENSG00000148671
Gene ExpressionADIRF [ NCBI-GEO ]   ADIRF [ EBI - ARRAY_EXPRESS ]   ADIRF [ SEEK ]   ADIRF [ MEM ]
Gene Expression Viewer (FireBrowse)ADIRF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10974
GTEX Portal (Tissue expression)ADIRF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15847   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15847  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15847
Splice isoforms : SwissVarQ15847
PhosPhoSitePlusQ15847
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ADIRF
DMDM Disease mutations10974
Blocks (Seattle)ADIRF
SuperfamilyQ15847
Human Protein AtlasENSG00000148671
Peptide AtlasQ15847
HPRD16575
IPIIPI00020017   IPI00644556   
Protein Interaction databases
DIP (DOE-UCLA)Q15847
IntAct (EBI)Q15847
FunCoupENSG00000148671
BioGRIDADIRF
STRING (EMBL)ADIRF
ZODIACADIRF
Ontologies - Pathways
QuickGOQ15847
Ontology : AmiGOmolecular_function  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  cell differentiation  positive regulation of fat cell differentiation  positive regulation of transcription from RNA polymerase II promoter  extracellular exosome  cellular response to radiation  cellular response to cisplatin  regulation of response to drug  
Ontology : EGO-EBImolecular_function  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  cell differentiation  positive regulation of fat cell differentiation  positive regulation of transcription from RNA polymerase II promoter  extracellular exosome  cellular response to radiation  cellular response to cisplatin  regulation of response to drug  
NDEx NetworkADIRF
Atlas of Cancer Signalling NetworkADIRF
Wikipedia pathwaysADIRF
Orthology - Evolution
OrthoDB10974
GeneTree (enSembl)ENSG00000148671
Phylogenetic Trees/Animal Genes : TreeFamADIRF
HOVERGENQ15847
HOGENOMQ15847
Homologs : HomoloGeneADIRF
Homology/Alignments : Family Browser (UCSC)ADIRF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADIRF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADIRF
dbVarADIRF
ClinVarADIRF
1000_GenomesADIRF 
Exome Variant ServerADIRF
ExAC (Exome Aggregation Consortium)ADIRF (select the gene name)
Genetic variants : HAPMAP10974
Genomic Variants (DGV)ADIRF [DGVbeta]
DECIPHERADIRF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADIRF 
Mutations
ICGC Data PortalADIRF 
TCGA Data PortalADIRF 
Broad Tumor PortalADIRF
OASIS PortalADIRF [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADIRF
BioMutasearch ADIRF
DgiDB (Drug Gene Interaction Database)ADIRF
DoCM (Curated mutations)ADIRF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADIRF (select a term)
intoGenADIRF
Cancer3DADIRF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenADIRF
Genetic Testing Registry ADIRF
NextProtQ15847 [Medical]
TSGene10974
GENETestsADIRF
Huge Navigator ADIRF [HugePedia]
snp3D : Map Gene to Disease10974
BioCentury BCIQADIRF
ClinGenADIRF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10974
Chemical/Pharm GKB GenePA134930409
Clinical trialADIRF
Miscellaneous
canSAR (ICR)ADIRF (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADIRF
EVEXADIRF
GoPubMedADIRF
iHOPADIRF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:05:14 CEST 2017

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