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ADNP2 (ADNP homeobox 2)

Identity

Alias_namesZNF508
zinc finger protein 508
Alias_symbol (synonym)KIAA0863
Other alias
HGNC (Hugo) ADNP2
LocusID (NCBI) 22850
Atlas_Id 60165
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 80109031 and ends at 80140345 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADNP2 (18q23) / L3MBTL4 (18p11.31)ADNP2 (18q23) / PARD6G (18q23)ADNP2 (18q23) / PQLC1 (18q23)
FUS (16p11.2) / ADNP2 (18q23)ADNP2 L3MBTL4ADNP2 PQLC1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADNP2   23803
Cards
Entrez_Gene (NCBI)ADNP2  22850  ADNP homeobox 2
AliasesZNF508
GeneCards (Weizmann)ADNP2
Ensembl hg19 (Hinxton)ENSG00000101544 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101544 [Gene_View]  chr18:80109031-80140345 [Contig_View]  ADNP2 [Vega]
ICGC DataPortalENSG00000101544
TCGA cBioPortalADNP2
AceView (NCBI)ADNP2
Genatlas (Paris)ADNP2
WikiGenes22850
SOURCE (Princeton)ADNP2
Genetics Home Reference (NIH)ADNP2
Genomic and cartography
GoldenPath hg38 (UCSC)ADNP2  -     chr18:80109031-80140345 +  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADNP2  -     18q23   [Description]    (hg19-Feb_2009)
EnsemblADNP2 - 18q23 [CytoView hg19]  ADNP2 - 18q23 [CytoView hg38]
Mapping of homologs : NCBIADNP2 [Mapview hg19]  ADNP2 [Mapview hg38]
OMIM617422   
Gene and transcription
Genbank (Entrez)AB020670 AK022688 AK023032 AK292566 BC071589
RefSeq transcript (Entrez)NM_014913
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADNP2
Cluster EST : UnigeneHs.131915 [ NCBI ]
CGAP (NCI)Hs.131915
Alternative Splicing GalleryENSG00000101544
Gene ExpressionADNP2 [ NCBI-GEO ]   ADNP2 [ EBI - ARRAY_EXPRESS ]   ADNP2 [ SEEK ]   ADNP2 [ MEM ]
Gene Expression Viewer (FireBrowse)ADNP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22850
GTEX Portal (Tissue expression)ADNP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IQ32   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IQ32  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IQ32
Splice isoforms : SwissVarQ6IQ32
PhosPhoSitePlusQ6IQ32
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_dom    Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)HOX (SM00389)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ADNP2
DMDM Disease mutations22850
Blocks (Seattle)ADNP2
SuperfamilyQ6IQ32
Human Protein AtlasENSG00000101544
Peptide AtlasQ6IQ32
HPRD13822
IPIIPI00402209   
Protein Interaction databases
DIP (DOE-UCLA)Q6IQ32
IntAct (EBI)Q6IQ32
FunCoupENSG00000101544
BioGRIDADNP2
STRING (EMBL)ADNP2
ZODIACADNP2
Ontologies - Pathways
QuickGOQ6IQ32
Ontology : AmiGOmolecular_function  DNA binding  protein binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  neuron differentiation  positive regulation of cell growth  cellular response to oxidative stress  metal ion binding  negative regulation of cell death  cellular response to retinoic acid  
Ontology : EGO-EBImolecular_function  DNA binding  protein binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  neuron differentiation  positive regulation of cell growth  cellular response to oxidative stress  metal ion binding  negative regulation of cell death  cellular response to retinoic acid  
NDEx NetworkADNP2
Atlas of Cancer Signalling NetworkADNP2
Wikipedia pathwaysADNP2
Orthology - Evolution
OrthoDB22850
GeneTree (enSembl)ENSG00000101544
Phylogenetic Trees/Animal Genes : TreeFamADNP2
HOVERGENQ6IQ32
HOGENOMQ6IQ32
Homologs : HomoloGeneADNP2
Homology/Alignments : Family Browser (UCSC)ADNP2
Gene fusions - Rearrangements
Fusion: TCGAADNP2 L3MBTL4
Fusion: TCGAADNP2 PQLC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADNP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADNP2
dbVarADNP2
ClinVarADNP2
1000_GenomesADNP2 
Exome Variant ServerADNP2
ExAC (Exome Aggregation Consortium)ADNP2 (select the gene name)
Genetic variants : HAPMAP22850
Genomic Variants (DGV)ADNP2 [DGVbeta]
DECIPHERADNP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADNP2 
Mutations
ICGC Data PortalADNP2 
TCGA Data PortalADNP2 
Broad Tumor PortalADNP2
OASIS PortalADNP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADNP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDADNP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADNP2
DgiDB (Drug Gene Interaction Database)ADNP2
DoCM (Curated mutations)ADNP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADNP2 (select a term)
intoGenADNP2
Cancer3DADNP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617422   
Orphanet
MedgenADNP2
Genetic Testing Registry ADNP2
NextProtQ6IQ32 [Medical]
TSGene22850
GENETestsADNP2
Target ValidationADNP2
Huge Navigator ADNP2 [HugePedia]
snp3D : Map Gene to Disease22850
BioCentury BCIQADNP2
ClinGenADNP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22850
Chemical/Pharm GKB GenePA162375700
Clinical trialADNP2
Miscellaneous
canSAR (ICR)ADNP2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADNP2
EVEXADNP2
GoPubMedADNP2
iHOPADNP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:37:36 CEST 2017

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