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ADPRHL2 (ADP-ribosylhydrolase like 2)

Identity

Alias_symbol (synonym)ARH3
FLJ20446
Other alias
HGNC (Hugo) ADPRHL2
LocusID (NCBI) 54936
Atlas_Id 60171
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 36554453 and ends at 36559533 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADPRHL2 (1p34.3) / SHPK (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADPRHL2   21304
Cards
Entrez_Gene (NCBI)ADPRHL2  54936  ADP-ribosylhydrolase like 2
AliasesARH3
GeneCards (Weizmann)ADPRHL2
Ensembl hg19 (Hinxton)ENSG00000116863 [Gene_View]  chr1:36554453-36559533 [Contig_View]  ADPRHL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000116863 [Gene_View]  chr1:36554453-36559533 [Contig_View]  ADPRHL2 [Vega]
ICGC DataPortalENSG00000116863
TCGA cBioPortalADPRHL2
AceView (NCBI)ADPRHL2
Genatlas (Paris)ADPRHL2
WikiGenes54936
SOURCE (Princeton)ADPRHL2
Genetics Home Reference (NIH)ADPRHL2
Genomic and cartography
GoldenPath hg19 (UCSC)ADPRHL2  -     chr1:36554453-36559533 +  1p34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ADPRHL2  -     1p34.3   [Description]    (hg38-Dec_2013)
EnsemblADPRHL2 - 1p34.3 [CytoView hg19]  ADPRHL2 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIADPRHL2 [Mapview hg19]  ADPRHL2 [Mapview hg38]
OMIM610624   
Gene and transcription
Genbank (Entrez)AF212236 AJ427295 AK000453 AK223037 AK295283
RefSeq transcript (Entrez)NM_017825
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)ADPRHL2
Cluster EST : UnigeneHs.18021 [ NCBI ]
CGAP (NCI)Hs.18021
Alternative Splicing GalleryENSG00000116863
Gene ExpressionADPRHL2 [ NCBI-GEO ]   ADPRHL2 [ EBI - ARRAY_EXPRESS ]   ADPRHL2 [ SEEK ]   ADPRHL2 [ MEM ]
Gene Expression Viewer (FireBrowse)ADPRHL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54936
GTEX Portal (Tissue expression)ADPRHL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX46
Splice isoforms : SwissVarQ9NX46
Catalytic activity : Enzyme3.2.1.143 [ Enzyme-Expasy ]   3.2.1.1433.2.1.143 [ IntEnz-EBI ]   3.2.1.143 [ BRENDA ]   3.2.1.143 [ KEGG ]   
PhosPhoSitePlusQ9NX46
Domains : Interpro (EBI)Ribosyl_crysJ1   
Domain families : Pfam (Sanger)ADP_ribosyl_GH (PF03747)   
Domain families : Pfam (NCBI)pfam03747   
Conserved Domain (NCBI)ADPRHL2
DMDM Disease mutations54936
Blocks (Seattle)ADPRHL2
PDB (SRS)2FOZ    2FP0    2G4K   
PDB (PDBSum)2FOZ    2FP0    2G4K   
PDB (IMB)2FOZ    2FP0    2G4K   
PDB (RSDB)2FOZ    2FP0    2G4K   
Structural Biology KnowledgeBase2FOZ    2FP0    2G4K   
SCOP (Structural Classification of Proteins)2FOZ    2FP0    2G4K   
CATH (Classification of proteins structures)2FOZ    2FP0    2G4K   
SuperfamilyQ9NX46
Human Protein AtlasENSG00000116863
Peptide AtlasQ9NX46
HPRD12432
IPIIPI00015865   IPI01013974   IPI01012710   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX46
IntAct (EBI)Q9NX46
FunCoupENSG00000116863
BioGRIDADPRHL2
STRING (EMBL)ADPRHL2
ZODIACADPRHL2
Ontologies - Pathways
QuickGOQ9NX46
Ontology : AmiGOpoly(ADP-ribose) glycohydrolase activity  nucleoplasm  mitochondrial matrix  metabolic process  metal ion binding  cellular response to superoxide  
Ontology : EGO-EBIpoly(ADP-ribose) glycohydrolase activity  nucleoplasm  mitochondrial matrix  metabolic process  metal ion binding  cellular response to superoxide  
NDEx NetworkADPRHL2
Atlas of Cancer Signalling NetworkADPRHL2
Wikipedia pathwaysADPRHL2
Orthology - Evolution
OrthoDB54936
GeneTree (enSembl)ENSG00000116863
Phylogenetic Trees/Animal Genes : TreeFamADPRHL2
HOVERGENQ9NX46
HOGENOMQ9NX46
Homologs : HomoloGeneADPRHL2
Homology/Alignments : Family Browser (UCSC)ADPRHL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADPRHL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADPRHL2
dbVarADPRHL2
ClinVarADPRHL2
1000_GenomesADPRHL2 
Exome Variant ServerADPRHL2
ExAC (Exome Aggregation Consortium)ADPRHL2 (select the gene name)
Genetic variants : HAPMAP54936
Genomic Variants (DGV)ADPRHL2 [DGVbeta]
DECIPHER (Syndromes)1:36554453-36559533  ENSG00000116863
CONAN: Copy Number AnalysisADPRHL2 
Mutations
ICGC Data PortalADPRHL2 
TCGA Data PortalADPRHL2 
Broad Tumor PortalADPRHL2
OASIS PortalADPRHL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADPRHL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDADPRHL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADPRHL2
DgiDB (Drug Gene Interaction Database)ADPRHL2
DoCM (Curated mutations)ADPRHL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADPRHL2 (select a term)
intoGenADPRHL2
Cancer3DADPRHL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610624   
Orphanet
MedgenADPRHL2
Genetic Testing Registry ADPRHL2
NextProtQ9NX46 [Medical]
TSGene54936
GENETestsADPRHL2
Huge Navigator ADPRHL2 [HugePedia]
snp3D : Map Gene to Disease54936
BioCentury BCIQADPRHL2
ClinGenADPRHL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54936
Chemical/Pharm GKB GenePA134903576
Clinical trialADPRHL2
Miscellaneous
canSAR (ICR)ADPRHL2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADPRHL2
EVEXADPRHL2
GoPubMedADPRHL2
iHOPADPRHL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:50 CET 2017

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