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ADPRM (ADP-ribose/CDP-alcohol diphosphatase, manganese dependent)

Identity

Alias_namesC17orf48
chromosome 17 open reading frame 48
ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent
Alias_symbol (synonym)MDS006
Other aliasNBLA03831
HGNC (Hugo) ADPRM
LocusID (NCBI) 56985
Atlas_Id 60172
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 10697610 and ends at 10711558 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OR51E2 (11p15.4) / ADPRM (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADPRM   30925
Cards
Entrez_Gene (NCBI)ADPRM  56985  ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
AliasesC17orf48; MDS006; NBLA03831
GeneCards (Weizmann)ADPRM
Ensembl hg19 (Hinxton)ENSG00000170222 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170222 [Gene_View]  chr17:10697610-10711558 [Contig_View]  ADPRM [Vega]
ICGC DataPortalENSG00000170222
TCGA cBioPortalADPRM
AceView (NCBI)ADPRM
Genatlas (Paris)ADPRM
WikiGenes56985
SOURCE (Princeton)ADPRM
Genetics Home Reference (NIH)ADPRM
Genomic and cartography
GoldenPath hg38 (UCSC)ADPRM  -     chr17:10697610-10711558 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADPRM  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblADPRM - 17p13.1 [CytoView hg19]  ADPRM - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIADPRM [Mapview hg19]  ADPRM [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB073393 AF168715 AK292629 BC001294 BC070155
RefSeq transcript (Entrez)NM_020233
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADPRM
Cluster EST : UnigeneHs.708369 [ NCBI ]
CGAP (NCI)Hs.708369
Alternative Splicing GalleryENSG00000170222
Gene ExpressionADPRM [ NCBI-GEO ]   ADPRM [ EBI - ARRAY_EXPRESS ]   ADPRM [ SEEK ]   ADPRM [ MEM ]
Gene Expression Viewer (FireBrowse)ADPRM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56985
GTEX Portal (Tissue expression)ADPRM
Human Protein AtlasENSG00000170222-ADPRM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LIE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LIE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LIE5
Splice isoforms : SwissVarQ3LIE5
Catalytic activity : Enzyme3.6.1.13 [ Enzyme-Expasy ]   3.6.1.133.6.1.13 [ IntEnz-EBI ]   3.6.1.13 [ BRENDA ]   3.6.1.13 [ KEGG ]   
PhosPhoSitePlusQ3LIE5
Domains : Interpro (EBI)Calcineurin-like_PHP_ApaH    Metallo-depent_PP-like   
Domain families : Pfam (Sanger)Metallophos (PF00149)   
Domain families : Pfam (NCBI)pfam00149   
Conserved Domain (NCBI)ADPRM
DMDM Disease mutations56985
Blocks (Seattle)ADPRM
SuperfamilyQ3LIE5
Human Protein Atlas [tissue]ENSG00000170222-ADPRM [tissue]
Peptide AtlasQ3LIE5
HPRD17473
IPIIPI00744968   IPI00025025   
Protein Interaction databases
DIP (DOE-UCLA)Q3LIE5
IntAct (EBI)Q3LIE5
FunCoupENSG00000170222
BioGRIDADPRM
STRING (EMBL)ADPRM
ZODIACADPRM
Ontologies - Pathways
QuickGOQ3LIE5
Ontology : AmiGOcytosol  nucleobase-containing small molecule catabolic process  metal ion binding  ADP-ribose diphosphatase activity  CDP-glycerol diphosphatase activity  
Ontology : EGO-EBIcytosol  nucleobase-containing small molecule catabolic process  metal ion binding  ADP-ribose diphosphatase activity  CDP-glycerol diphosphatase activity  
Pathways : KEGGPurine metabolism    Glycerophospholipid metabolism   
NDEx NetworkADPRM
Atlas of Cancer Signalling NetworkADPRM
Wikipedia pathwaysADPRM
Orthology - Evolution
OrthoDB56985
GeneTree (enSembl)ENSG00000170222
Phylogenetic Trees/Animal Genes : TreeFamADPRM
HOVERGENQ3LIE5
HOGENOMQ3LIE5
Homologs : HomoloGeneADPRM
Homology/Alignments : Family Browser (UCSC)ADPRM
Gene fusions - Rearrangements
Tumor Fusion PortalADPRM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADPRM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADPRM
dbVarADPRM
ClinVarADPRM
1000_GenomesADPRM 
Exome Variant ServerADPRM
ExAC (Exome Aggregation Consortium)ENSG00000170222
GNOMAD BrowserENSG00000170222
Genetic variants : HAPMAP56985
Genomic Variants (DGV)ADPRM [DGVbeta]
DECIPHERADPRM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADPRM 
Mutations
ICGC Data PortalADPRM 
TCGA Data PortalADPRM 
Broad Tumor PortalADPRM
OASIS PortalADPRM [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADPRM
BioMutasearch ADPRM
DgiDB (Drug Gene Interaction Database)ADPRM
DoCM (Curated mutations)ADPRM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADPRM (select a term)
intoGenADPRM
Cancer3DADPRM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETADPRM
MedgenADPRM
Genetic Testing Registry ADPRM
NextProtQ3LIE5 [Medical]
TSGene56985
GENETestsADPRM
Target ValidationADPRM
Huge Navigator ADPRM [HugePedia]
snp3D : Map Gene to Disease56985
BioCentury BCIQADPRM
ClinGenADPRM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56985
Chemical/Pharm GKB GenePA142672231
Clinical trialADPRM
Miscellaneous
canSAR (ICR)ADPRM (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADPRM
EVEXADPRM
GoPubMedADPRM
iHOPADPRM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:50 CET 2017

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