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AFAP1-AS1 (AFAP1 antisense RNA 1)

Identity

Alias_namesAFAP1AS
AFAP1-AS
AFAP1 antisense RNA (non-protein coding)
AFAP1 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)MGC10981
Other alias
HGNC (Hugo) AFAP1-AS1
LocusID (NCBI) 84740
Atlas_Id 55669
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 7778986 and ends at 7780654 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LOC100132247 () / AFAP1-AS1 (4p16.1)MTX2 (2q31.1) / AFAP1-AS1 (4p16.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AFAP1-AS1   28141
Cards
Entrez_Gene (NCBI)AFAP1-AS1  84740  AFAP1 antisense RNA 1
AliasesAFAP1-AS; AFAP1AS
GeneCards (Weizmann)AFAP1-AS1
Ensembl hg19 (Hinxton)ENSG00000272620 [Gene_View]  chr4:7778986-7780654 [Contig_View]  AFAP1-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000272620 [Gene_View]  chr4:7778986-7780654 [Contig_View]  AFAP1-AS1 [Vega]
ICGC DataPortalENSG00000272620
TCGA cBioPortalAFAP1-AS1
AceView (NCBI)AFAP1-AS1
Genatlas (Paris)AFAP1-AS1
WikiGenes84740
SOURCE (Princeton)AFAP1-AS1
Genetics Home Reference (NIH)AFAP1-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)AFAP1-AS1  -     chr4:7778986-7780654 +  4p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AFAP1-AS1  -     4p16.1   [Description]    (hg38-Dec_2013)
EnsemblAFAP1-AS1 - 4p16.1 [CytoView hg19]  AFAP1-AS1 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIAFAP1-AS1 [Mapview hg19]  AFAP1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC004397 BC014113 BC043614 HG496710
RefSeq transcript (Entrez)NM_032654
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006051 NW_004929314
Consensus coding sequences : CCDS (NCBI)AFAP1-AS1
Cluster EST : UnigeneHs.663029 [ NCBI ]
CGAP (NCI)Hs.663029
Alternative Splicing GalleryENSG00000272620
Gene ExpressionAFAP1-AS1 [ NCBI-GEO ]   AFAP1-AS1 [ EBI - ARRAY_EXPRESS ]   AFAP1-AS1 [ SEEK ]   AFAP1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)AFAP1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)84740
GTEX Portal (Tissue expression)AFAP1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AFAP1-AS1
DMDM Disease mutations84740
Blocks (Seattle)AFAP1-AS1
Human Protein AtlasENSG00000272620
IPIIPI00745542   
Protein Interaction databases
FunCoupENSG00000272620
BioGRIDAFAP1-AS1
STRING (EMBL)AFAP1-AS1
ZODIACAFAP1-AS1
Ontologies - Pathways
Huge Navigator AFAP1-AS1 [HugePedia]
snp3D : Map Gene to Disease84740
BioCentury BCIQAFAP1-AS1
ClinGenAFAP1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84740
Chemical/Pharm GKB GenePA165663067
Clinical trialAFAP1-AS1
Miscellaneous
canSAR (ICR)AFAP1-AS1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAFAP1-AS1
EVEXAFAP1-AS1
GoPubMedAFAP1-AS1
iHOPAFAP1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:55:10 CET 2017

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