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AFDN-AS1 (AFDN antisense RNA 1 (head to head))

Identity

Other aliasC6orf124
HGC6.4
MLLT4-AS1
dJ431P23.3
HGNC (Hugo) AFDN-AS1
LocusID (NCBI) 653483
Atlas_Id 78706
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 167823890 and ends at 167826709 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AFDN-AS1   21236
Cards
Entrez_Gene (NCBI)AFDN-AS1  653483  AFDN antisense RNA 1 (head to head)
AliasesC6orf124; HGC6.4; MLLT4-AS1; dJ431P23.3
GeneCards (Weizmann)AFDN-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:167823890-167826709 [Contig_View]  AFDN-AS1 [Vega]
TCGA cBioPortalAFDN-AS1
AceView (NCBI)AFDN-AS1
Genatlas (Paris)AFDN-AS1
WikiGenes653483
SOURCE (Princeton)AFDN-AS1
Genetics Home Reference (NIH)AFDN-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)AFDN-AS1  -     chr6:167823890-167826709 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AFDN-AS1  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblAFDN-AS1 - 6q27 [CytoView hg19]  AFDN-AS1 - 6q27 [CytoView hg38]
Mapping of homologs : NCBIAFDN-AS1 [Mapview hg19]  AFDN-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB016898 AK091690 AK301419 AK307980 DC331926
RefSeq transcript (Entrez)NM_001042508
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AFDN-AS1
Cluster EST : UnigeneHs.520556 [ NCBI ]
CGAP (NCI)Hs.520556
Gene ExpressionAFDN-AS1 [ NCBI-GEO ]   AFDN-AS1 [ EBI - ARRAY_EXPRESS ]   AFDN-AS1 [ SEEK ]   AFDN-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)AFDN-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653483
GTEX Portal (Tissue expression)AFDN-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6Z5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6Z5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6Z5
Splice isoforms : SwissVarQ9Y6Z5
PhosPhoSitePlusQ9Y6Z5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AFDN-AS1
DMDM Disease mutations653483
Blocks (Seattle)AFDN-AS1
SuperfamilyQ9Y6Z5
Peptide AtlasQ9Y6Z5
IPIIPI00644048   IPI00883654   IPI00964634   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6Z5
IntAct (EBI)Q9Y6Z5
BioGRIDAFDN-AS1
STRING (EMBL)AFDN-AS1
ZODIACAFDN-AS1
Ontologies - Pathways
QuickGOQ9Y6Z5
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkAFDN-AS1
Atlas of Cancer Signalling NetworkAFDN-AS1
Wikipedia pathwaysAFDN-AS1
Orthology - Evolution
OrthoDB653483
Phylogenetic Trees/Animal Genes : TreeFamAFDN-AS1
HOVERGENQ9Y6Z5
HOGENOMQ9Y6Z5
Homologs : HomoloGeneAFDN-AS1
Homology/Alignments : Family Browser (UCSC)AFDN-AS1
Gene fusions - Rearrangements
Fusion : QuiverAFDN-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAFDN-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AFDN-AS1
dbVarAFDN-AS1
ClinVarAFDN-AS1
1000_GenomesAFDN-AS1 
Exome Variant ServerAFDN-AS1
Varsome BrowserAFDN-AS1
Genetic variants : HAPMAP653483
Genomic Variants (DGV)AFDN-AS1 [DGVbeta]
DECIPHERAFDN-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAFDN-AS1 
Mutations
ICGC Data PortalAFDN-AS1 
TCGA Data PortalAFDN-AS1 
Broad Tumor PortalAFDN-AS1
OASIS PortalAFDN-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAFDN-AS1
BioMutasearch AFDN-AS1
DgiDB (Drug Gene Interaction Database)AFDN-AS1
DoCM (Curated mutations)AFDN-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AFDN-AS1 (select a term)
intoGenAFDN-AS1
Cancer3DAFDN-AS1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETAFDN-AS1
MedgenAFDN-AS1
Genetic Testing Registry AFDN-AS1
NextProtQ9Y6Z5 [Medical]
TSGene653483
GENETestsAFDN-AS1
Target ValidationAFDN-AS1
Huge Navigator AFDN-AS1 [HugePedia]
snp3D : Map Gene to Disease653483
BioCentury BCIQAFDN-AS1
ClinGenAFDN-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653483
Chemical/Pharm GKB GenePA134959590
Clinical trialAFDN-AS1
Miscellaneous
canSAR (ICR)AFDN-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAFDN-AS1
EVEXAFDN-AS1
GoPubMedAFDN-AS1
iHOPAFDN-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:34:51 CEST 2018

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