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AFDN-DT (AFDN divergent transcript)

Identity

Alias (NCBI)AFDN-AS1
C6orf124
HGC6.4
MLLT4-AS1
dJ431P23.3
HGNC (Hugo) AFDN-DT
LocusID (NCBI) 653483
Atlas_Id 70342
Location 6q27  [Link to chromosome band 6q27]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)AFDN-DT   21236
Cards
Entrez_Gene (NCBI)AFDN-DT  653483  AFDN divergent transcript
AliasesAFDN-AS1; C6orf124; HGC6.4; MLLT4-AS1; 
dJ431P23.3
GeneCards (Weizmann)AFDN-DT
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  AFDN-DT [Vega]
TCGA cBioPortalAFDN-DT
AceView (NCBI)AFDN-DT
Genatlas (Paris)AFDN-DT
WikiGenes653483
SOURCE (Princeton)AFDN-DT
Genetics Home Reference (NIH)AFDN-DT
Genomic and cartography
GoldenPath hg38 (UCSC)AFDN-DT  -  
GoldenPath hg19 (UCSC)AFDN-DT  -  
GoldenPathAFDN-DT - [CytoView hg19]  AFDN-DT - [CytoView hg38]
genome Data Viewer NCBIAFDN-DT [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB016898 AK091690 AK301419 AK307980 DC331926
RefSeq transcript (Entrez)NM_001042508
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AFDN-DT
Gene ExpressionAFDN-DT [ NCBI-GEO ]   AFDN-DT [ EBI - ARRAY_EXPRESS ]   AFDN-DT [ SEEK ]   AFDN-DT [ MEM ]
Gene Expression Viewer (FireBrowse)AFDN-DT [ Firebrowse - Broad ]
GenevisibleExpression of AFDN-DT in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653483
GTEX Portal (Tissue expression)AFDN-DT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6Z5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6Z5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6Z5
Splice isoforms : SwissVarQ9Y6Z5
PhosPhoSitePlusQ9Y6Z5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AFDN-DT
DMDM Disease mutations653483
Blocks (Seattle)AFDN-DT
SuperfamilyQ9Y6Z5
Peptide AtlasQ9Y6Z5
IPIIPI00644048   IPI00883654   IPI00964634   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6Z5
IntAct (EBI)Q9Y6Z5
BioGRIDAFDN-DT
STRING (EMBL)AFDN-DT
ZODIACAFDN-DT
Ontologies - Pathways
QuickGOQ9Y6Z5
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkAFDN-DT
Atlas of Cancer Signalling NetworkAFDN-DT
Wikipedia pathwaysAFDN-DT
Orthology - Evolution
OrthoDB653483
Phylogenetic Trees/Animal Genes : TreeFamAFDN-DT
HOGENOMQ9Y6Z5
Homologs : HomoloGeneAFDN-DT
Homology/Alignments : Family Browser (UCSC)AFDN-DT
Gene fusions - Rearrangements
Fusion : QuiverAFDN-DT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAFDN-DT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AFDN-DT
dbVarAFDN-DT
ClinVarAFDN-DT
1000_GenomesAFDN-DT 
Exome Variant ServerAFDN-DT
Varsome BrowserAFDN-DT
Genetic variants : HAPMAP653483
Genomic Variants (DGV)AFDN-DT [DGVbeta]
DECIPHERAFDN-DT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAFDN-DT 
Mutations
ICGC Data PortalAFDN-DT 
TCGA Data PortalAFDN-DT 
Broad Tumor PortalAFDN-DT
OASIS PortalAFDN-DT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAFDN-DT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AFDN-DT
DgiDB (Drug Gene Interaction Database)AFDN-DT
DoCM (Curated mutations)AFDN-DT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AFDN-DT (select a term)
intoGenAFDN-DT
Cancer3DAFDN-DT(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETAFDN-DT
MedgenAFDN-DT
Genetic Testing Registry AFDN-DT
NextProtQ9Y6Z5 [Medical]
TSGene653483
GENETestsAFDN-DT
Target ValidationAFDN-DT
Huge Navigator AFDN-DT [HugePedia]
snp3D : Map Gene to Disease653483
BioCentury BCIQAFDN-DT
ClinGenAFDN-DT
Clinical trials, drugs, therapy
Protein Interactions : CTD653483
Pharm GKB GenePA134959590
Clinical trialAFDN-DT
Miscellaneous
canSAR (ICR)AFDN-DT (select the gene name)
HarmonizomeAFDN-DT
DataMed IndexAFDN-DT
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAFDN-DT
EVEXAFDN-DT
GoPubMedAFDN-DT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:02:54 CEST 2020

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