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AFM (afamin)

Identity

Alias_symbol (synonym)ALB2
ALBA
Other aliasALF
HGNC (Hugo) AFM
LocusID (NCBI) 173
Atlas_Id 50979
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 73481745 and ends at 73504001 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HNF4G (8q21.11) / AFM (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AFM   316
Cards
Entrez_Gene (NCBI)AFM  173  afamin
AliasesALB2; ALBA; ALF
GeneCards (Weizmann)AFM
Ensembl hg19 (Hinxton)ENSG00000079557 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000079557 [Gene_View]  chr4:73481745-73504001 [Contig_View]  AFM [Vega]
ICGC DataPortalENSG00000079557
TCGA cBioPortalAFM
AceView (NCBI)AFM
Genatlas (Paris)AFM
WikiGenes173
SOURCE (Princeton)AFM
Genetics Home Reference (NIH)AFM
Genomic and cartography
GoldenPath hg38 (UCSC)AFM  -     chr4:73481745-73504001 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AFM  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblAFM - 4q13.3 [CytoView hg19]  AFM - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBIAFM [Mapview hg19]  AFM [Mapview hg38]
OMIM104145   
Gene and transcription
Genbank (Entrez)AH003117 AH003117 AH003117 AK290556 BC109020
RefSeq transcript (Entrez)NM_001133
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AFM
Cluster EST : UnigeneHs.168718 [ NCBI ]
CGAP (NCI)Hs.168718
Alternative Splicing GalleryENSG00000079557
Gene ExpressionAFM [ NCBI-GEO ]   AFM [ EBI - ARRAY_EXPRESS ]   AFM [ SEEK ]   AFM [ MEM ]
Gene Expression Viewer (FireBrowse)AFM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)173
GTEX Portal (Tissue expression)AFM
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43652   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43652  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43652
Splice isoforms : SwissVarP43652
PhosPhoSitePlusP43652
Domaine pattern : Prosite (Expaxy)ALBUMIN_1 (PS00212)    ALBUMIN_2 (PS51438)   
Domains : Interpro (EBI)ALB/AFP/VDB    Serum_albumin-like    Serum_albumin/AFP/Afamin    Serum_albumin_CS    Serum_albumin_N   
Domain families : Pfam (Sanger)Serum_albumin (PF00273)   
Domain families : Pfam (NCBI)pfam00273   
Domain families : Smart (EMBL)ALBUMIN (SM00103)  
Conserved Domain (NCBI)AFM
DMDM Disease mutations173
Blocks (Seattle)AFM
SuperfamilyP43652
Human Protein AtlasENSG00000079557
Peptide AtlasP43652
HPRD00073
IPIIPI00019943   
Protein Interaction databases
DIP (DOE-UCLA)P43652
IntAct (EBI)P43652
FunCoupENSG00000079557
BioGRIDAFM
STRING (EMBL)AFM
ZODIACAFM
Ontologies - Pathways
QuickGOP43652
Ontology : AmiGOextracellular region  extracellular space  vitamin E binding  vitamin E binding  vitamin transport  extracellular exosome  blood microparticle  
Ontology : EGO-EBIextracellular region  extracellular space  vitamin E binding  vitamin E binding  vitamin transport  extracellular exosome  blood microparticle  
NDEx NetworkAFM
Atlas of Cancer Signalling NetworkAFM
Wikipedia pathwaysAFM
Orthology - Evolution
OrthoDB173
GeneTree (enSembl)ENSG00000079557
Phylogenetic Trees/Animal Genes : TreeFamAFM
HOVERGENP43652
HOGENOMP43652
Homologs : HomoloGeneAFM
Homology/Alignments : Family Browser (UCSC)AFM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAFM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AFM
dbVarAFM
ClinVarAFM
1000_GenomesAFM 
Exome Variant ServerAFM
ExAC (Exome Aggregation Consortium)AFM (select the gene name)
Genetic variants : HAPMAP173
Genomic Variants (DGV)AFM [DGVbeta]
DECIPHERAFM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAFM 
Mutations
ICGC Data PortalAFM 
TCGA Data PortalAFM 
Broad Tumor PortalAFM
OASIS PortalAFM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAFM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAFM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AFM
DgiDB (Drug Gene Interaction Database)AFM
DoCM (Curated mutations)AFM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AFM (select a term)
intoGenAFM
Cancer3DAFM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104145   
Orphanet
MedgenAFM
Genetic Testing Registry AFM
NextProtP43652 [Medical]
TSGene173
GENETestsAFM
Target ValidationAFM
Huge Navigator AFM [HugePedia]
snp3D : Map Gene to Disease173
BioCentury BCIQAFM
ClinGenAFM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD173
Chemical/Pharm GKB GenePA24613
Clinical trialAFM
Miscellaneous
canSAR (ICR)AFM (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAFM
EVEXAFM
GoPubMedAFM
iHOPAFM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:56:32 CEST 2017

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