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AFM (afamin)

Identity

Alias (NCBI)ALB2
ALBA
ALF
HGNC (Hugo) AFM
HGNC Alias symbALB2
ALBA
LocusID (NCBI) 173
Atlas_Id 50979
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 73481745 and ends at 73504001 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HNF4G (8q21.11) / AFM (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)AFM   316
Cards
Entrez_Gene (NCBI)AFM    afamin
AliasesALB2; ALBA; ALF
GeneCards (Weizmann)AFM
Ensembl hg19 (Hinxton)ENSG00000079557 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000079557 [Gene_View]  ENSG00000079557 [Sequence]  chr4:73481745-73504001 [Contig_View]  AFM [Vega]
ICGC DataPortalENSG00000079557
TCGA cBioPortalAFM
AceView (NCBI)AFM
Genatlas (Paris)AFM
SOURCE (Princeton)AFM
Genetics Home Reference (NIH)AFM
Genomic and cartography
GoldenPath hg38 (UCSC)AFM  -     chr4:73481745-73504001 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AFM  -     4q13.3   [Description]    (hg19-Feb_2009)
GoldenPathAFM - 4q13.3 [CytoView hg19]  AFM - 4q13.3 [CytoView hg38]
ImmunoBaseENSG00000079557
Genome Data Viewer NCBIAFM [Mapview hg19]  
OMIM104145   
Gene and transcription
Genbank (Entrez)AH003117 AH003117 AH003117 AK290556 BC109020
RefSeq transcript (Entrez)NM_001133
Consensus coding sequences : CCDS (NCBI)AFM
Gene ExpressionAFM [ NCBI-GEO ]   AFM [ EBI - ARRAY_EXPRESS ]   AFM [ SEEK ]   AFM [ MEM ]
Gene Expression Viewer (FireBrowse)AFM [ Firebrowse - Broad ]
GenevisibleExpression of AFM in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)173
GTEX Portal (Tissue expression)AFM
Human Protein AtlasENSG00000079557-AFM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43652   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43652  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43652
PhosPhoSitePlusP43652
Domaine pattern : Prosite (Expaxy)ALBUMIN_1 (PS00212)    ALBUMIN_2 (PS51438)   
Domains : Interpro (EBI)ALB/AFP/VDB    Serum_albumin-like    Serum_albumin/AFP/Afamin    Serum_albumin_CS    Serum_albumin_N   
Domain families : Pfam (Sanger)Serum_albumin (PF00273)   
Domain families : Pfam (NCBI)pfam00273   
Domain families : Smart (EMBL)ALBUMIN (SM00103)  
Conserved Domain (NCBI)AFM
PDB (RSDB)5OKL    6FAK    6RQ7   
PDB Europe5OKL    6FAK    6RQ7   
PDB (PDBSum)5OKL    6FAK    6RQ7   
PDB (IMB)5OKL    6FAK    6RQ7   
Structural Biology KnowledgeBase5OKL    6FAK    6RQ7   
SCOP (Structural Classification of Proteins)5OKL    6FAK    6RQ7   
CATH (Classification of proteins structures)5OKL    6FAK    6RQ7   
SuperfamilyP43652
AlphaFold pdb e-kbP43652   
Human Protein Atlas [tissue]ENSG00000079557-AFM [tissue]
HPRD00073
Protein Interaction databases
DIP (DOE-UCLA)P43652
IntAct (EBI)P43652
BioGRIDAFM
STRING (EMBL)AFM
ZODIACAFM
Ontologies - Pathways
QuickGOP43652
Ontology : AmiGOfatty acid binding  protein binding  extracellular region  extracellular space  extracellular space  cytoplasm  transport  zinc ion binding  vitamin E binding  vitamin E binding  vitamin E binding  protein stabilization  vitamin transport  vitamin transport  extracellular exosome  protein transport within extracellular region  protein transport within extracellular region  blood microparticle  
Ontology : EGO-EBIfatty acid binding  protein binding  extracellular region  extracellular space  extracellular space  cytoplasm  transport  zinc ion binding  vitamin E binding  vitamin E binding  vitamin E binding  protein stabilization  vitamin transport  vitamin transport  extracellular exosome  protein transport within extracellular region  protein transport within extracellular region  blood microparticle  
NDEx NetworkAFM
Atlas of Cancer Signalling NetworkAFM
Wikipedia pathwaysAFM
Orthology - Evolution
OrthoDB173
GeneTree (enSembl)ENSG00000079557
Phylogenetic Trees/Animal Genes : TreeFamAFM
Homologs : HomoloGeneAFM
Homology/Alignments : Family Browser (UCSC)AFM
Gene fusions - Rearrangements
Fusion : QuiverAFM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAFM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AFM
dbVarAFM
ClinVarAFM
MonarchAFM
1000_GenomesAFM 
Exome Variant ServerAFM
GNOMAD BrowserENSG00000079557
Varsome BrowserAFM
ACMGAFM variants
VarityP43652
Genomic Variants (DGV)AFM [DGVbeta]
DECIPHERAFM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAFM 
Mutations
ICGC Data PortalAFM 
TCGA Data PortalAFM 
Broad Tumor PortalAFM
OASIS PortalAFM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAFM  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAFM
Mutations and Diseases : HGMDAFM
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaAFM
DgiDB (Drug Gene Interaction Database)AFM
DoCM (Curated mutations)AFM
CIViC (Clinical Interpretations of Variants in Cancer)AFM
Cancer3DAFM
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104145   
Orphanet
DisGeNETAFM
MedgenAFM
Genetic Testing Registry AFM
NextProtP43652 [Medical]
GENETestsAFM
Target ValidationAFM
Huge Navigator AFM [HugePedia]
ClinGenAFM
Clinical trials, drugs, therapy
MyCancerGenomeAFM
Protein Interactions : CTDAFM
Pharm GKB GenePA24613
PharosP43652
Clinical trialAFM
Miscellaneous
canSAR (ICR)AFM
HarmonizomeAFM
DataMed IndexAFM
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAFM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 14:58:46 CEST 2021

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