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AFMID (arylformamidase)

Identity

Alias_symbol (synonym)DKFZp686F03259
KF
Other aliasFKF
KFA
HGNC (Hugo) AFMID
LocusID (NCBI) 125061
Atlas_Id 60183
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 78187317 and ends at 78207701 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
A2M (12p13.31) / AFMID (17q25.3)AFMID (17q25.3) / IDS (Xq28)AFMID (17q25.3) / SYNGR2 (17q25.3)
AFMID (17q25.3) / TNRC6C (17q25.3)BCL2L11 (2q13) / AFMID (17q25.3)IDS (Xq28) / AFMID (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AFMID   20910
Cards
Entrez_Gene (NCBI)AFMID  125061  arylformamidase
AliasesFKF; KF; KFA
GeneCards (Weizmann)AFMID
Ensembl hg19 (Hinxton)ENSG00000183077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183077 [Gene_View]  chr17:78187317-78207701 [Contig_View]  AFMID [Vega]
ICGC DataPortalENSG00000183077
TCGA cBioPortalAFMID
AceView (NCBI)AFMID
Genatlas (Paris)AFMID
WikiGenes125061
SOURCE (Princeton)AFMID
Genetics Home Reference (NIH)AFMID
Genomic and cartography
GoldenPath hg38 (UCSC)AFMID  -     chr17:78187317-78207701 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AFMID  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblAFMID - 17q25.3 [CytoView hg19]  AFMID - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIAFMID [Mapview hg19]  AFMID [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC020920 BC132824 BC142973 BX648442 EU832465
RefSeq transcript (Entrez)NM_001010982 NM_001145526
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AFMID
Cluster EST : UnigeneHs.558614 [ NCBI ]
CGAP (NCI)Hs.558614
Alternative Splicing GalleryENSG00000183077
Gene ExpressionAFMID [ NCBI-GEO ]   AFMID [ EBI - ARRAY_EXPRESS ]   AFMID [ SEEK ]   AFMID [ MEM ]
Gene Expression Viewer (FireBrowse)AFMID [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125061
GTEX Portal (Tissue expression)AFMID
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ63HM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ63HM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ63HM1
Splice isoforms : SwissVarQ63HM1
PhosPhoSitePlusQ63HM1
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_3    KFase_ver/fungi-typ   
Domain families : Pfam (Sanger)Abhydrolase_3 (PF07859)   
Domain families : Pfam (NCBI)pfam07859   
Conserved Domain (NCBI)AFMID
DMDM Disease mutations125061
Blocks (Seattle)AFMID
SuperfamilyQ63HM1
Human Protein AtlasENSG00000183077
Peptide AtlasQ63HM1
HPRD16478
IPIIPI00917771   IPI00470470   IPI00916169   IPI00917780   IPI00916846   IPI00797463   IPI00916563   
Protein Interaction databases
DIP (DOE-UCLA)Q63HM1
IntAct (EBI)Q63HM1
FunCoupENSG00000183077
BioGRIDAFMID
STRING (EMBL)AFMID
ZODIACAFMID
Ontologies - Pathways
QuickGOQ63HM1
Ontology : AmiGOarylformamidase activity  nucleus  cytoplasm  cytosol  hydrolase activity  tryptophan catabolic process to kynurenine  tryptophan catabolic process to kynurenine  
Ontology : EGO-EBIarylformamidase activity  nucleus  cytoplasm  cytosol  hydrolase activity  tryptophan catabolic process to kynurenine  tryptophan catabolic process to kynurenine  
Pathways : KEGGTryptophan metabolism    Glyoxylate and dicarboxylate metabolism   
NDEx NetworkAFMID
Atlas of Cancer Signalling NetworkAFMID
Wikipedia pathwaysAFMID
Orthology - Evolution
OrthoDB125061
GeneTree (enSembl)ENSG00000183077
Phylogenetic Trees/Animal Genes : TreeFamAFMID
HOVERGENQ63HM1
HOGENOMQ63HM1
Homologs : HomoloGeneAFMID
Homology/Alignments : Family Browser (UCSC)AFMID
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAFMID [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AFMID
dbVarAFMID
ClinVarAFMID
1000_GenomesAFMID 
Exome Variant ServerAFMID
ExAC (Exome Aggregation Consortium)AFMID (select the gene name)
Genetic variants : HAPMAP125061
Genomic Variants (DGV)AFMID [DGVbeta]
DECIPHERAFMID [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAFMID 
Mutations
ICGC Data PortalAFMID 
TCGA Data PortalAFMID 
Broad Tumor PortalAFMID
OASIS PortalAFMID [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAFMID  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAFMID
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AFMID
DgiDB (Drug Gene Interaction Database)AFMID
DoCM (Curated mutations)AFMID (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AFMID (select a term)
intoGenAFMID
Cancer3DAFMID(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAFMID
Genetic Testing Registry AFMID
NextProtQ63HM1 [Medical]
TSGene125061
GENETestsAFMID
Target ValidationAFMID
Huge Navigator AFMID [HugePedia]
snp3D : Map Gene to Disease125061
BioCentury BCIQAFMID
ClinGenAFMID
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125061
Chemical/Pharm GKB GenePA134958475
Clinical trialAFMID
Miscellaneous
canSAR (ICR)AFMID (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAFMID
EVEXAFMID
GoPubMedAFMID
iHOPAFMID
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:01 CEST 2017

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