Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AFTPH (aftiphilin)

Identity

Alias_symbol (synonym)MGC33965
FLJ20080
FLJ23793
Nbla10388
Other alias
HGNC (Hugo) AFTPH
LocusID (NCBI) 54812
Atlas_Id 60184
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 64524305 and ends at 64593004 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AFTPH (2p14) / SOS2 (14q21.3)AFTPH (2p14) / THRB (3p24.2)AFTPH (2p14) / WDPCP (2p15)
RAP2A (13q32.1) / AFTPH (2p14)SP3 (2q31.1) / AFTPH (2p14)WDPCP (2p15) / AFTPH (2p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AFTPH   25951
Cards
Entrez_Gene (NCBI)AFTPH  54812  aftiphilin
AliasesNbla10388
GeneCards (Weizmann)AFTPH
Ensembl hg19 (Hinxton)ENSG00000119844 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119844 [Gene_View]  chr2:64524305-64593004 [Contig_View]  AFTPH [Vega]
ICGC DataPortalENSG00000119844
TCGA cBioPortalAFTPH
AceView (NCBI)AFTPH
Genatlas (Paris)AFTPH
WikiGenes54812
SOURCE (Princeton)AFTPH
Genetics Home Reference (NIH)AFTPH
Genomic and cartography
GoldenPath hg38 (UCSC)AFTPH  -     chr2:64524305-64593004 +  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AFTPH  -     2p14   [Description]    (hg19-Feb_2009)
EnsemblAFTPH - 2p14 [CytoView hg19]  AFTPH - 2p14 [CytoView hg38]
Mapping of homologs : NCBIAFTPH [Mapview hg19]  AFTPH [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA583062 AB073356 AK000087 AK021899 AK024658
RefSeq transcript (Entrez)NM_001002243 NM_017657 NM_203437
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AFTPH
Cluster EST : UnigeneHs.655167 [ NCBI ]
CGAP (NCI)Hs.655167
Alternative Splicing GalleryENSG00000119844
Gene ExpressionAFTPH [ NCBI-GEO ]   AFTPH [ EBI - ARRAY_EXPRESS ]   AFTPH [ SEEK ]   AFTPH [ MEM ]
Gene Expression Viewer (FireBrowse)AFTPH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54812
GTEX Portal (Tissue expression)AFTPH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ULP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ULP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ULP2
Splice isoforms : SwissVarQ6ULP2
PhosPhoSitePlusQ6ULP2
Domains : Interpro (EBI)Clathrin-bd   
Domain families : Pfam (Sanger)Clathrin_bdg (PF15045)   
Domain families : Pfam (NCBI)pfam15045   
Conserved Domain (NCBI)AFTPH
DMDM Disease mutations54812
Blocks (Seattle)AFTPH
SuperfamilyQ6ULP2
Human Protein AtlasENSG00000119844
Peptide AtlasQ6ULP2
HPRD10635
IPIIPI00554740   IPI00329005   IPI00554475   IPI00429547   IPI00434952   IPI01014066   
Protein Interaction databases
DIP (DOE-UCLA)Q6ULP2
IntAct (EBI)Q6ULP2
FunCoupENSG00000119844
BioGRIDAFTPH
STRING (EMBL)AFTPH
ZODIACAFTPH
Ontologies - Pathways
QuickGOQ6ULP2
Ontology : AmiGOnucleus  nucleoplasm  Golgi apparatus  cytosol  protein transport  AP-1 adaptor complex  clathrin binding  intracellular membrane-bounded organelle  
Ontology : EGO-EBInucleus  nucleoplasm  Golgi apparatus  cytosol  protein transport  AP-1 adaptor complex  clathrin binding  intracellular membrane-bounded organelle  
NDEx NetworkAFTPH
Atlas of Cancer Signalling NetworkAFTPH
Wikipedia pathwaysAFTPH
Orthology - Evolution
OrthoDB54812
GeneTree (enSembl)ENSG00000119844
Phylogenetic Trees/Animal Genes : TreeFamAFTPH
HOVERGENQ6ULP2
HOGENOMQ6ULP2
Homologs : HomoloGeneAFTPH
Homology/Alignments : Family Browser (UCSC)AFTPH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAFTPH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AFTPH
dbVarAFTPH
ClinVarAFTPH
1000_GenomesAFTPH 
Exome Variant ServerAFTPH
ExAC (Exome Aggregation Consortium)AFTPH (select the gene name)
Genetic variants : HAPMAP54812
Genomic Variants (DGV)AFTPH [DGVbeta]
DECIPHERAFTPH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAFTPH 
Mutations
ICGC Data PortalAFTPH 
TCGA Data PortalAFTPH 
Broad Tumor PortalAFTPH
OASIS PortalAFTPH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAFTPH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAFTPH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AFTPH
DgiDB (Drug Gene Interaction Database)AFTPH
DoCM (Curated mutations)AFTPH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AFTPH (select a term)
intoGenAFTPH
Cancer3DAFTPH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAFTPH
Genetic Testing Registry AFTPH
NextProtQ6ULP2 [Medical]
TSGene54812
GENETestsAFTPH
Huge Navigator AFTPH [HugePedia]
snp3D : Map Gene to Disease54812
BioCentury BCIQAFTPH
ClinGenAFTPH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54812
Chemical/Pharm GKB GenePA145149871
Clinical trialAFTPH
Miscellaneous
canSAR (ICR)AFTPH (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAFTPH
EVEXAFTPH
GoPubMedAFTPH
iHOPAFTPH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 10:59:33 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.