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AGA (aspartylglucosaminidase)

Identity

Other namesAGU
ASRG
GA
HGNC (Hugo) AGA
LocusID (NCBI) 175
Location 4q34.3
Location_base_pair Starts at 178351929 and ends at 178363657 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AGA   318
Cards
Entrez_Gene (NCBI)AGA  175  aspartylglucosaminidase
GeneCards (Weizmann)AGA
Ensembl (Hinxton)ENSG00000038002 [Gene_View]  chr4:178351929-178363657 [Contig_View]  AGA [Vega]
ICGC DataPortalENSG00000038002
cBioPortalAGA
AceView (NCBI)AGA
Genatlas (Paris)AGA
WikiGenes175
SOURCE (Princeton)NM_000027 NM_001171988
Genomic and cartography
GoldenPath (UCSC)AGA  -  4q34.3   chr4:178351929-178363657 -  4q34.3   [Description]    (hg19-Feb_2009)
EnsemblAGA - 4q34.3 [CytoView]
Mapping of homologs : NCBIAGA [Mapview]
OMIM208400   613228   
Gene and transcription
Genbank (Entrez)AA490958 AK303370 AK312982 AW467768 BC012392
RefSeq transcript (Entrez)NM_000027 NM_001171988
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_011845 NT_016354 NW_001838921 NW_004929320
Consensus coding sequences : CCDS (NCBI)AGA
Cluster EST : UnigeneHs.207776 [ NCBI ]
CGAP (NCI)Hs.207776
Alternative Splicing : Fast-db (Paris)GSHG0023667
Alternative Splicing GalleryENSG00000038002
Gene ExpressionAGA [ NCBI-GEO ]     AGA [ SEEK ]   AGA [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20933 (Uniprot)
NextProtP20933  [Medical]
With graphics : InterProP20933
Splice isoforms : SwissVarP20933 (Swissvar)
Catalytic activity : Enzyme3.5.1.26 [ Enzyme-Expasy ]   3.5.1.263.5.1.26 [ IntEnz-EBI ]   3.5.1.26 [ BRENDA ]   3.5.1.26 [ KEGG ]   
Domains : Interpro (EBI)Ntn_hydrolases_N [organisation]   Peptidase_T2 [organisation]  
Related proteins : CluSTrP20933
Domain families : Pfam (Sanger)Asparaginase_2 (PF01112)   
Domain families : Pfam (NCBI)pfam01112   
DMDM Disease mutations175
Blocks (Seattle)P20933
PDB (SRS)1APY    1APZ   
PDB (PDBSum)1APY    1APZ   
PDB (IMB)1APY    1APZ   
PDB (RSDB)1APY    1APZ   
Human Protein AtlasENSG00000038002 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP20933
HPRD01949
IPIIPI00026259   IPI00909281   IPI00955394   IPI00966865   
Protein Interaction databases
DIP (DOE-UCLA)P20933
IntAct (EBI)P20933
FunCoupENSG00000038002
BioGRIDAGA
InParanoidP20933
Interologous Interaction database P20933
IntegromeDBAGA
STRING (EMBL)AGA
Ontologies - Pathways
Ontology : AmiGON4-(beta-N-acetylglucosaminyl)-L-asparaginase activity  N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity  lysosome  endoplasmic reticulum  proteolysis  protein deglycosylation  protein deglycosylation  peptidase activity  protein self-association  protein maturation  extracellular vesicular exosome  
Ontology : EGO-EBIN4-(beta-N-acetylglucosaminyl)-L-asparaginase activity  N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity  lysosome  endoplasmic reticulum  proteolysis  protein deglycosylation  protein deglycosylation  peptidase activity  protein self-association  protein maturation  extracellular vesicular exosome  
Pathways : KEGGOther glycan degradation    Lysosome   
Protein Interaction DatabaseAGA
Wikipedia pathwaysAGA
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)AGA
snp3D : Map Gene to Disease175
SNP (GeneSNP Utah)AGA
SNP : HGBaseAGA
Genetic variants : HAPMAPAGA
Exome VariantAGA
1000_GenomesAGA 
ICGC programENSG00000038002 
Somatic Mutations in Cancer : COSMICAGA 
CONAN: Copy Number AnalysisAGA 
Mutations and Diseases : HGMDAGA
Genomic VariantsAGA  AGA [DGVbeta]
dbVarAGA
ClinVarAGA
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM208400    613228   
MedgenAGA
GENETestsAGA
Disease Genetic AssociationAGA
Huge Navigator AGA [HugePedia]  AGA [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneAGA
Homology/Alignments : Family Browser (UCSC)AGA
Phylogenetic Trees/Animal Genes : TreeFamAGA
Chemical/Protein Interactions : CTD175
Chemical/Pharm GKB GenePA24615
Clinical trialAGA
Cancer Resource (Charite)ENSG00000038002
Other databases
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
CoreMineAGA
iHOPAGA
OncoSearchAGA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:42:05 CEST 2014

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