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AGA (aspartylglucosaminidase)

Identity

Other namesAGU
ASRG
GA
HGNC (Hugo) AGA
LocusID (NCBI) 175
Location 4q34.3
Location_base_pair Starts at 178351929 and ends at 178363657 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AGA   318
Cards
Entrez_Gene (NCBI)AGA  175  aspartylglucosaminidase
GeneCards (Weizmann)AGA
Ensembl hg19 (Hinxton)ENSG00000038002 [Gene_View]  chr4:178351929-178363657 [Contig_View]  AGA [Vega]
Ensembl hg38 (Hinxton)ENSG00000038002 [Gene_View]  chr4:178351929-178363657 [Contig_View]  AGA [Vega]
ICGC DataPortalENSG00000038002
cBioPortalAGA
AceView (NCBI)AGA
Genatlas (Paris)AGA
WikiGenes175
SOURCE (Princeton)AGA
Genomic and cartography
GoldenPath hg19 (UCSC)AGA  -     chr4:178351929-178363657 -  4q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AGA  -     4q34.3   [Description]    (hg38-Dec_2013)
EnsemblAGA - 4q34.3 [CytoView hg19]  AGA - 4q34.3 [CytoView hg38]
Mapping of homologs : NCBIAGA [Mapview hg19]  AGA [Mapview hg38]
OMIM208400   613228   
Gene and transcription
Genbank (Entrez)AA490958 AK303370 AK312982 AW467768 BC012392
RefSeq transcript (Entrez)NM_000027 NM_001171988
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_011845 NT_016354 NW_001838921 NW_004929320
Consensus coding sequences : CCDS (NCBI)AGA
Cluster EST : UnigeneHs.207776 [ NCBI ]
CGAP (NCI)Hs.207776
Alternative Splicing : Fast-db (Paris)GSHG0023667
Alternative Splicing GalleryENSG00000038002
Gene ExpressionAGA [ NCBI-GEO ]     AGA [ SEEK ]   AGA [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20933 (Uniprot)
NextProtP20933  [Medical]
With graphics : InterProP20933
Splice isoforms : SwissVarP20933 (Swissvar)
Catalytic activity : Enzyme3.5.1.26 [ Enzyme-Expasy ]   3.5.1.263.5.1.26 [ IntEnz-EBI ]   3.5.1.26 [ BRENDA ]   3.5.1.26 [ KEGG ]   
Domains : Interpro (EBI)Ntn_hydrolases_N    Peptidase_T2   
Related proteins : CluSTrP20933
Domain families : Pfam (Sanger)Asparaginase_2 (PF01112)   
Domain families : Pfam (NCBI)pfam01112   
DMDM Disease mutations175
Blocks (Seattle)P20933
PDB (SRS)1APY    1APZ   
PDB (PDBSum)1APY    1APZ   
PDB (IMB)1APY    1APZ   
PDB (RSDB)1APY    1APZ   
Human Protein AtlasENSG00000038002
Peptide AtlasP20933
HPRD01949
IPIIPI00026259   IPI00909281   IPI00955394   IPI00966865   
Protein Interaction databases
DIP (DOE-UCLA)P20933
IntAct (EBI)P20933
FunCoupENSG00000038002
BioGRIDAGA
IntegromeDBAGA
STRING (EMBL)AGA
Ontologies - Pathways
QuickGOP20933
Ontology : AmiGON4-(beta-N-acetylglucosaminyl)-L-asparaginase activity  N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity  lysosome  endoplasmic reticulum  proteolysis  protein deglycosylation  protein deglycosylation  peptidase activity  protein self-association  protein maturation  extracellular vesicular exosome  
Ontology : EGO-EBIN4-(beta-N-acetylglucosaminyl)-L-asparaginase activity  N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity  lysosome  endoplasmic reticulum  proteolysis  protein deglycosylation  protein deglycosylation  peptidase activity  protein self-association  protein maturation  extracellular vesicular exosome  
Pathways : KEGGOther glycan degradation    Lysosome   
Protein Interaction DatabaseAGA
DoCM (Curated mutations)AGA
Wikipedia pathwaysAGA
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerAGA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGA
dbVarAGA
ClinVarAGA
1000_GenomesAGA 
Exome Variant ServerAGA
SNP (GeneSNP Utah)AGA
SNP : HGBaseAGA
Genetic variants : HAPMAPAGA
Genomic VariantsAGA  AGA [DGVbeta]
Mutations
ICGC Data PortalENSG00000038002 
Somatic Mutations in Cancer : COSMICAGA 
CONAN: Copy Number AnalysisAGA 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:178351929-178363657
Mutations and Diseases : HGMDAGA
OMIM208400    613228   
MedgenAGA
NextProtP20933 [Medical]
GENETestsAGA
Disease Genetic AssociationAGA
Huge Navigator AGA [HugePedia]  AGA [HugeCancerGEM]
snp3D : Map Gene to Disease175
DGIdb (Drug Gene Interaction db)AGA
General knowledge
Homologs : HomoloGeneAGA
Homology/Alignments : Family Browser (UCSC)AGA
Phylogenetic Trees/Animal Genes : TreeFamAGA
Chemical/Protein Interactions : CTD175
Chemical/Pharm GKB GenePA24615
Clinical trialAGA
Cancer Resource (Charite)ENSG00000038002
Other databases
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
CoreMineAGA
GoPubMedAGA
iHOPAGA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 20:02:53 CET 2014

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