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AGAP11 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 11)

Identity

Alias (NCBI)-
HGNC (Hugo) AGAP11
HGNC Alias symbKIAA1975
HGNC Previous nameankyrin repeat and GTPase domain Arf GTPase activating protein 11
LocusID (NCBI) 119385
Atlas_Id 60186
Location 10q23.2  [Link to chromosome band 10q23]
Location_base_pair Starts at 86970336 and ends at 87010203 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)AGAP11   29421
Cards
Entrez_Gene (NCBI)AGAP11    ArfGAP with GTPase domain, ankyrin repeat and PH domain 11
Aliases
GeneCards (Weizmann)AGAP11
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:86970336-87010203 [Contig_View]  AGAP11 [Vega]
TCGA cBioPortalAGAP11
AceView (NCBI)AGAP11
Genatlas (Paris)AGAP11
SOURCE (Princeton)AGAP11
Genetics Home Reference (NIH)AGAP11
Genomic and cartography
GoldenPath hg38 (UCSC)AGAP11  -     chr10:86970336-87010203 +  10q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGAP11  -     10q23.2   [Description]    (hg19-Feb_2009)
GoldenPathAGAP11 - 10q23.2 [CytoView hg19]  AGAP11 - 10q23.2 [CytoView hg38]
Genome Data Viewer NCBIAGAP11 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB075855 AK097165 BC140762
RefSeq transcript (Entrez)NM_133447
Consensus coding sequences : CCDS (NCBI)AGAP11
Gene ExpressionAGAP11 [ NCBI-GEO ]   AGAP11 [ EBI - ARRAY_EXPRESS ]   AGAP11 [ SEEK ]   AGAP11 [ MEM ]
Gene Expression Viewer (FireBrowse)AGAP11 [ Firebrowse - Broad ]
GenevisibleExpression of AGAP11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119385
GTEX Portal (Tissue expression)AGAP11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF27
PhosPhoSitePlusQ8TF27
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ARFGAP (PS50115)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    ARFGAP/RecO    ArfGAP_dom    ArfGAP_dom_sf    PH-like_dom_sf    PH_domain   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    ArfGap (PF01412)   
Domain families : Pfam (NCBI)pfam12796    pfam01412   
Domain families : Smart (EMBL)ANK (SM00248)  ArfGap (SM00105)  PH (SM00233)  
Conserved Domain (NCBI)AGAP11
SuperfamilyQ8TF27
AlphaFold pdb e-kbQ8TF27   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF27
IntAct (EBI)Q8TF27
BioGRIDAGAP11
STRING (EMBL)AGAP11
ZODIACAGAP11
Ontologies - Pathways
QuickGOQ8TF27
Ontology : AmiGOGTPase activator activity  nucleus  metal ion binding  regulation of catalytic activity  
Ontology : EGO-EBIGTPase activator activity  nucleus  metal ion binding  regulation of catalytic activity  
NDEx NetworkAGAP11
Atlas of Cancer Signalling NetworkAGAP11
Wikipedia pathwaysAGAP11
Orthology - Evolution
OrthoDB119385
Phylogenetic Trees/Animal Genes : TreeFamAGAP11
Homologs : HomoloGeneAGAP11
Homology/Alignments : Family Browser (UCSC)AGAP11
Gene fusions - Rearrangements
Fusion : QuiverAGAP11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGAP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGAP11
dbVarAGAP11
ClinVarAGAP11
MonarchAGAP11
1000_GenomesAGAP11 
Exome Variant ServerAGAP11
Varsome BrowserAGAP11
ACMGAGAP11 variants
VarityQ8TF27
Genomic Variants (DGV)AGAP11 [DGVbeta]
DECIPHERAGAP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGAP11 
Mutations
ICGC Data PortalAGAP11 
TCGA Data PortalAGAP11 
Broad Tumor PortalAGAP11
OASIS PortalAGAP11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAGAP11
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaAGAP11
DgiDB (Drug Gene Interaction Database)AGAP11
DoCM (Curated mutations)AGAP11
CIViC (Clinical Interpretations of Variants in Cancer)AGAP11
Cancer3DAGAP11
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETAGAP11
MedgenAGAP11
Genetic Testing Registry AGAP11
NextProtQ8TF27 [Medical]
GENETestsAGAP11
Target ValidationAGAP11
Huge Navigator AGAP11 [HugePedia]
ClinGenAGAP11
Clinical trials, drugs, therapy
MyCancerGenomeAGAP11
Protein Interactions : CTDAGAP11
Pharm GKB GenePA164715011
PharosQ8TF27
Clinical trialAGAP11
Miscellaneous
canSAR (ICR)AGAP11
HarmonizomeAGAP11
DataMed IndexAGAP11
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAGAP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:41:41 CEST 2021

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