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AGAP11 (ankyrin repeat and GTPase domain Arf GTPase activating protein 11)

Identity

Alias_namesankyrin repeat and GTPase domain Arf GTPase activating protein 11
Alias_symbol (synonym)KIAA1975
Other alias-
HGNC (Hugo) AGAP11
LocusID (NCBI) 119385
Atlas_Id 60186
Location 10q23.2  [Link to chromosome band 10q23]
Location_base_pair Starts at 88730498 and ends at 88769960 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGAP11   29421
Cards
Entrez_Gene (NCBI)AGAP11  119385  ankyrin repeat and GTPase domain Arf GTPase activating protein 11
Aliases
GeneCards (Weizmann)AGAP11
Ensembl hg19 (Hinxton) [Gene_View]  chr10:88730498-88769960 [Contig_View]  AGAP11 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:88730498-88769960 [Contig_View]  AGAP11 [Vega]
TCGA cBioPortalAGAP11
AceView (NCBI)AGAP11
Genatlas (Paris)AGAP11
WikiGenes119385
SOURCE (Princeton)AGAP11
Genetics Home Reference (NIH)AGAP11
Genomic and cartography
GoldenPath hg19 (UCSC)AGAP11  -     chr10:88730498-88769960 +  10q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AGAP11  -     10q23.2   [Description]    (hg38-Dec_2013)
EnsemblAGAP11 - 10q23.2 [CytoView hg19]  AGAP11 - 10q23.2 [CytoView hg38]
Mapping of homologs : NCBIAGAP11 [Mapview hg19]  AGAP11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075855 AK097165 BC140762
RefSeq transcript (Entrez)NM_133447
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)AGAP11
Cluster EST : UnigeneHs.511787 [ NCBI ]
CGAP (NCI)Hs.511787
Gene ExpressionAGAP11 [ NCBI-GEO ]   AGAP11 [ EBI - ARRAY_EXPRESS ]   AGAP11 [ SEEK ]   AGAP11 [ MEM ]
Gene Expression Viewer (FireBrowse)AGAP11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119385
GTEX Portal (Tissue expression)AGAP11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF27
Splice isoforms : SwissVarQ8TF27
PhosPhoSitePlusQ8TF27
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ARFGAP (PS50115)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    ArfGAP    PH_domain    PH_like_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    ArfGap (PF01412)    PH (PF00169)   
Domain families : Pfam (NCBI)pfam12796    pfam01412    pfam00169   
Domain families : Smart (EMBL)ANK (SM00248)  ArfGap (SM00105)  PH (SM00233)  
Conserved Domain (NCBI)AGAP11
DMDM Disease mutations119385
Blocks (Seattle)AGAP11
SuperfamilyQ8TF27
Peptide AtlasQ8TF27
IPIIPI00398893   IPI00745030   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF27
IntAct (EBI)Q8TF27
BioGRIDAGAP11
STRING (EMBL)AGAP11
ZODIACAGAP11
Ontologies - Pathways
QuickGOQ8TF27
Ontology : AmiGOGTPase activator activity  positive regulation of GTPase activity  metal ion binding  
Ontology : EGO-EBIGTPase activator activity  positive regulation of GTPase activity  metal ion binding  
NDEx NetworkAGAP11
Atlas of Cancer Signalling NetworkAGAP11
Wikipedia pathwaysAGAP11
Orthology - Evolution
OrthoDB119385
Phylogenetic Trees/Animal Genes : TreeFamAGAP11
HOVERGENQ8TF27
HOGENOMQ8TF27
Homologs : HomoloGeneAGAP11
Homology/Alignments : Family Browser (UCSC)AGAP11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGAP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGAP11
dbVarAGAP11
ClinVarAGAP11
1000_GenomesAGAP11 
Exome Variant ServerAGAP11
ExAC (Exome Aggregation Consortium)AGAP11 (select the gene name)
Genetic variants : HAPMAP119385
Genomic Variants (DGV)AGAP11 [DGVbeta]
DECIPHER (Syndromes)10:88730498-88769960  
CONAN: Copy Number AnalysisAGAP11 
Mutations
ICGC Data PortalAGAP11 
TCGA Data PortalAGAP11 
Broad Tumor PortalAGAP11
OASIS PortalAGAP11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAGAP11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGAP11
DgiDB (Drug Gene Interaction Database)AGAP11
DoCM (Curated mutations)AGAP11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGAP11 (select a term)
intoGenAGAP11
Cancer3DAGAP11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAGAP11
Genetic Testing Registry AGAP11
NextProtQ8TF27 [Medical]
TSGene119385
GENETestsAGAP11
Huge Navigator AGAP11 [HugePedia]
snp3D : Map Gene to Disease119385
BioCentury BCIQAGAP11
ClinGenAGAP11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119385
Chemical/Pharm GKB GenePA164715011
Clinical trialAGAP11
Miscellaneous
canSAR (ICR)AGAP11 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGAP11
EVEXAGAP11
GoPubMedAGAP11
iHOPAGAP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:52 CET 2017

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