Atlas of Genetics and Cytogenetics in Oncology and Haematology


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AGAP2-AS1 (AGAP2 antisense RNA 1)

Identity

Alias_symbol (synonym)LOC100130776
PUNISHER
Other alias
HGNC (Hugo) AGAP2-AS1
LocusID (NCBI) 100130776
Atlas_Id 60187
Location 12q14.1  [Link to chromosome band 12q14]
Location_base_pair Starts at 57726240 and ends at 57728356 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGAP2-AS1   48633
Cards
Entrez_Gene (NCBI)AGAP2-AS1  100130776  AGAP2 antisense RNA 1
AliasesPUNISHER
GeneCards (Weizmann)AGAP2-AS1
Ensembl hg19 (Hinxton)ENSG00000255737 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255737 [Gene_View]  chr12:57726240-57728356 [Contig_View]  AGAP2-AS1 [Vega]
ICGC DataPortalENSG00000255737
TCGA cBioPortalAGAP2-AS1
AceView (NCBI)AGAP2-AS1
Genatlas (Paris)AGAP2-AS1
WikiGenes100130776
SOURCE (Princeton)AGAP2-AS1
Genetics Home Reference (NIH)AGAP2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)AGAP2-AS1  -     chr12:57726240-57728356 +  12q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGAP2-AS1  -     12q14.1   [Description]    (hg19-Feb_2009)
EnsemblAGAP2-AS1 - 12q14.1 [CytoView hg19]  AGAP2-AS1 - 12q14.1 [CytoView hg38]
Mapping of homologs : NCBIAGAP2-AS1 [Mapview hg19]  AGAP2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301303 BC019026 BC039697 BC069024 CN313469
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGAP2-AS1
Cluster EST : UnigeneHs.656080 [ NCBI ]
CGAP (NCI)Hs.656080
Alternative Splicing GalleryENSG00000255737
Gene ExpressionAGAP2-AS1 [ NCBI-GEO ]   AGAP2-AS1 [ EBI - ARRAY_EXPRESS ]   AGAP2-AS1 [ SEEK ]   AGAP2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)AGAP2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100130776
GTEX Portal (Tissue expression)AGAP2-AS1
Human Protein AtlasENSG00000255737-AGAP2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AGAP2-AS1
DMDM Disease mutations100130776
Blocks (Seattle)AGAP2-AS1
Human Protein Atlas [tissue]ENSG00000255737-AGAP2-AS1 [tissue]
IPIIPI00747969   
Protein Interaction databases
FunCoupENSG00000255737
BioGRIDAGAP2-AS1
STRING (EMBL)AGAP2-AS1
ZODIACAGAP2-AS1
Ontologies - Pathways
Huge Navigator AGAP2-AS1 [HugePedia]
snp3D : Map Gene to Disease100130776
BioCentury BCIQAGAP2-AS1
ClinGenAGAP2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130776
Clinical trialAGAP2-AS1
Miscellaneous
canSAR (ICR)AGAP2-AS1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGAP2-AS1
EVEXAGAP2-AS1
GoPubMedAGAP2-AS1
iHOPAGAP2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:25:44 CET 2017

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