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AGAP5 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 5)

Identity

Alias (NCBI)CTGLF2
HGNC (Hugo) AGAP5
HGNC Alias symbEm:AC073389.1
HGNC Previous nameCTGLF2
HGNC Previous namecentaurin, gamma-like family, member 2
LocusID (NCBI) 729092
Atlas_Id 60189
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73674275 and ends at 73701328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGAP5 (10q22.2) / CCDC155 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)AGAP5   23467
Cards
Entrez_Gene (NCBI)AGAP5    ArfGAP with GTPase domain, ankyrin repeat and PH domain 5
AliasesCTGLF2
GeneCards (Weizmann)AGAP5
Ensembl hg19 (Hinxton)ENSG00000172650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172650 [Gene_View]  ENSG00000172650 [Sequence]  chr10:73674275-73701328 [Contig_View]  AGAP5 [Vega]
ICGC DataPortalENSG00000172650
TCGA cBioPortalAGAP5
AceView (NCBI)AGAP5
Genatlas (Paris)AGAP5
SOURCE (Princeton)AGAP5
Genetics Home Reference (NIH)AGAP5
Genomic and cartography
GoldenPath hg38 (UCSC)AGAP5  -     chr10:73674275-73701328 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGAP5  -     10q22.2   [Description]    (hg19-Feb_2009)
GoldenPathAGAP5 - 10q22.2 [CytoView hg19]  AGAP5 - 10q22.2 [CytoView hg38]
ImmunoBaseENSG00000172650
Genome Data Viewer NCBIAGAP5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001144000
Consensus coding sequences : CCDS (NCBI)AGAP5
Gene ExpressionAGAP5 [ NCBI-GEO ]   AGAP5 [ EBI - ARRAY_EXPRESS ]   AGAP5 [ SEEK ]   AGAP5 [ MEM ]
Gene Expression Viewer (FireBrowse)AGAP5 [ Firebrowse - Broad ]
GenevisibleExpression of AGAP5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729092
GTEX Portal (Tissue expression)AGAP5
Human Protein AtlasENSG00000172650-AGAP5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIR3
PhosPhoSitePlusA6NIR3
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ARFGAP (PS50115)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    ARFGAP/RecO    ArfGAP_dom    ArfGAP_dom_sf    PH_domain   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    ArfGap (PF01412)   
Domain families : Pfam (NCBI)pfam12796    pfam01412   
Domain families : Smart (EMBL)ANK (SM00248)  ArfGap (SM00105)  PH (SM00233)  
Conserved Domain (NCBI)AGAP5
SuperfamilyA6NIR3
AlphaFold pdb e-kbA6NIR3   
Human Protein Atlas [tissue]ENSG00000172650-AGAP5 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NIR3
IntAct (EBI)A6NIR3
BioGRIDAGAP5
STRING (EMBL)AGAP5
ZODIACAGAP5
Ontologies - Pathways
QuickGOA6NIR3
Ontology : AmiGOGTPase activator activity  nucleus  metal ion binding  regulation of catalytic activity  
Ontology : EGO-EBIGTPase activator activity  nucleus  metal ion binding  regulation of catalytic activity  
NDEx NetworkAGAP5
Atlas of Cancer Signalling NetworkAGAP5
Wikipedia pathwaysAGAP5
Orthology - Evolution
OrthoDB729092
GeneTree (enSembl)ENSG00000172650
Phylogenetic Trees/Animal Genes : TreeFamAGAP5
Homologs : HomoloGeneAGAP5
Homology/Alignments : Family Browser (UCSC)AGAP5
Gene fusions - Rearrangements
Fusion : QuiverAGAP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGAP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGAP5
dbVarAGAP5
ClinVarAGAP5
MonarchAGAP5
1000_GenomesAGAP5 
Exome Variant ServerAGAP5
GNOMAD BrowserENSG00000172650
Varsome BrowserAGAP5
ACMGAGAP5 variants
VarityA6NIR3
Genomic Variants (DGV)AGAP5 [DGVbeta]
DECIPHERAGAP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGAP5 
Mutations
ICGC Data PortalAGAP5 
TCGA Data PortalAGAP5 
Broad Tumor PortalAGAP5
OASIS PortalAGAP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGAP5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAGAP5
Mutations and Diseases : HGMDAGAP5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaAGAP5
DgiDB (Drug Gene Interaction Database)AGAP5
DoCM (Curated mutations)AGAP5
CIViC (Clinical Interpretations of Variants in Cancer)AGAP5
Cancer3DAGAP5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETAGAP5
MedgenAGAP5
Genetic Testing Registry AGAP5
NextProtA6NIR3 [Medical]
GENETestsAGAP5
Target ValidationAGAP5
Huge Navigator AGAP5 [HugePedia]
ClinGenAGAP5
Clinical trials, drugs, therapy
MyCancerGenomeAGAP5
Protein Interactions : CTDAGAP5
Pharm GKB GenePA164715123
PharosA6NIR3
Clinical trialAGAP5
Miscellaneous
canSAR (ICR)AGAP5
HarmonizomeAGAP5
DataMed IndexAGAP5
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAGAP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:41:42 CEST 2021

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