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AGAP5 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 5)

Identity

Alias_namesCTGLF2
centaurin, gamma-like family, member 2
Alias_symbol (synonym)Em:AC073389.1
Other alias
HGNC (Hugo) AGAP5
LocusID (NCBI) 729092
Atlas_Id 60189
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73674275 and ends at 73697796 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AGAP5 (10q22.2) / CCDC155 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGAP5   23467
Cards
Entrez_Gene (NCBI)AGAP5  729092  ArfGAP with GTPase domain, ankyrin repeat and PH domain 5
AliasesCTGLF2
GeneCards (Weizmann)AGAP5
Ensembl hg19 (Hinxton)ENSG00000172650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172650 [Gene_View]  chr10:73674275-73697796 [Contig_View]  AGAP5 [Vega]
ICGC DataPortalENSG00000172650
TCGA cBioPortalAGAP5
AceView (NCBI)AGAP5
Genatlas (Paris)AGAP5
WikiGenes729092
SOURCE (Princeton)AGAP5
Genetics Home Reference (NIH)AGAP5
Genomic and cartography
GoldenPath hg38 (UCSC)AGAP5  -     chr10:73674275-73697796 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGAP5  -     10q22.2   [Description]    (hg19-Feb_2009)
EnsemblAGAP5 - 10q22.2 [CytoView hg19]  AGAP5 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIAGAP5 [Mapview hg19]  AGAP5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001144000
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGAP5
Cluster EST : UnigeneHs.651147 [ NCBI ]
CGAP (NCI)Hs.651147
Alternative Splicing GalleryENSG00000172650
Gene ExpressionAGAP5 [ NCBI-GEO ]   AGAP5 [ EBI - ARRAY_EXPRESS ]   AGAP5 [ SEEK ]   AGAP5 [ MEM ]
Gene Expression Viewer (FireBrowse)AGAP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729092
GTEX Portal (Tissue expression)AGAP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIR3
Splice isoforms : SwissVarA6NIR3
PhosPhoSitePlusA6NIR3
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ARFGAP (PS50115)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    ArfGAP    PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    ArfGap (PF01412)   
Domain families : Pfam (NCBI)pfam12796    pfam01412   
Domain families : Smart (EMBL)ANK (SM00248)  ArfGap (SM00105)  PH (SM00233)  
Conserved Domain (NCBI)AGAP5
DMDM Disease mutations729092
Blocks (Seattle)AGAP5
SuperfamilyA6NIR3
Human Protein AtlasENSG00000172650
Peptide AtlasA6NIR3
IPIIPI00413998   IPI00970853   
Protein Interaction databases
DIP (DOE-UCLA)A6NIR3
IntAct (EBI)A6NIR3
FunCoupENSG00000172650
BioGRIDAGAP5
STRING (EMBL)AGAP5
ZODIACAGAP5
Ontologies - Pathways
QuickGOA6NIR3
Ontology : AmiGOGTPase activator activity  positive regulation of GTPase activity  metal ion binding  
Ontology : EGO-EBIGTPase activator activity  positive regulation of GTPase activity  metal ion binding  
NDEx NetworkAGAP5
Atlas of Cancer Signalling NetworkAGAP5
Wikipedia pathwaysAGAP5
Orthology - Evolution
OrthoDB729092
GeneTree (enSembl)ENSG00000172650
Phylogenetic Trees/Animal Genes : TreeFamAGAP5
HOVERGENA6NIR3
HOGENOMA6NIR3
Homologs : HomoloGeneAGAP5
Homology/Alignments : Family Browser (UCSC)AGAP5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGAP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGAP5
dbVarAGAP5
ClinVarAGAP5
1000_GenomesAGAP5 
Exome Variant ServerAGAP5
ExAC (Exome Aggregation Consortium)AGAP5 (select the gene name)
Genetic variants : HAPMAP729092
Genomic Variants (DGV)AGAP5 [DGVbeta]
DECIPHERAGAP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGAP5 
Mutations
ICGC Data PortalAGAP5 
TCGA Data PortalAGAP5 
Broad Tumor PortalAGAP5
OASIS PortalAGAP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGAP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGAP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGAP5
DgiDB (Drug Gene Interaction Database)AGAP5
DoCM (Curated mutations)AGAP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGAP5 (select a term)
intoGenAGAP5
Cancer3DAGAP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAGAP5
Genetic Testing Registry AGAP5
NextProtA6NIR3 [Medical]
TSGene729092
GENETestsAGAP5
Target ValidationAGAP5
Huge Navigator AGAP5 [HugePedia]
snp3D : Map Gene to Disease729092
BioCentury BCIQAGAP5
ClinGenAGAP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729092
Chemical/Pharm GKB GenePA164715123
Clinical trialAGAP5
Miscellaneous
canSAR (ICR)AGAP5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGAP5
EVEXAGAP5
GoPubMedAGAP5
iHOPAGAP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:02 CEST 2017

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