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AGAP6 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 6)

Identity

Alias_namesCTGLF3
centaurin, gamma-like family, member 3
Alias_symbol (synonym)bA324H6.1
Other aliasAGAP-6
HGNC (Hugo) AGAP6
LocusID (NCBI) 414189
Atlas_Id 60190
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 51748078 and ends at 51770259 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGAP6   23466
Cards
Entrez_Gene (NCBI)AGAP6  414189  ArfGAP with GTPase domain, ankyrin repeat and PH domain 6
AliasesAGAP-6; CTGLF3; bA324H6.1
GeneCards (Weizmann)AGAP6
Ensembl hg19 (Hinxton)ENSG00000204149 [Gene_View]  chr10:51748078-51770259 [Contig_View]  AGAP6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204149 [Gene_View]  chr10:51748078-51770259 [Contig_View]  AGAP6 [Vega]
ICGC DataPortalENSG00000204149
TCGA cBioPortalAGAP6
AceView (NCBI)AGAP6
Genatlas (Paris)AGAP6
WikiGenes414189
SOURCE (Princeton)AGAP6
Genetics Home Reference (NIH)AGAP6
Genomic and cartography
GoldenPath hg19 (UCSC)AGAP6  -     chr10:51748078-51770259 +  10q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AGAP6  -     10q11.23   [Description]    (hg38-Dec_2013)
EnsemblAGAP6 - 10q11.23 [CytoView hg19]  AGAP6 - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBIAGAP6 [Mapview hg19]  AGAP6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC131545
RefSeq transcript (Entrez)NM_001077665
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)AGAP6
Cluster EST : UnigeneHs.536158 [ NCBI ]
CGAP (NCI)Hs.536158
Alternative Splicing GalleryENSG00000204149
Gene ExpressionAGAP6 [ NCBI-GEO ]   AGAP6 [ EBI - ARRAY_EXPRESS ]   AGAP6 [ SEEK ]   AGAP6 [ MEM ]
Gene Expression Viewer (FireBrowse)AGAP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414189
GTEX Portal (Tissue expression)AGAP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VW22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VW22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VW22
Splice isoforms : SwissVarQ5VW22
PhosPhoSitePlusQ5VW22
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ARFGAP (PS50115)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    ArfGAP    PH_domain    PH_like_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    ArfGap (PF01412)    PH (PF00169)   
Domain families : Pfam (NCBI)pfam12796    pfam01412    pfam00169   
Domain families : Smart (EMBL)ANK (SM00248)  ArfGap (SM00105)  PH (SM00233)  
Conserved Domain (NCBI)AGAP6
DMDM Disease mutations414189
Blocks (Seattle)AGAP6
SuperfamilyQ5VW22
Human Protein AtlasENSG00000204149
Peptide AtlasQ5VW22
IPIIPI00645616   IPI00884922   IPI00883586   
Protein Interaction databases
DIP (DOE-UCLA)Q5VW22
IntAct (EBI)Q5VW22
FunCoupENSG00000204149
BioGRIDAGAP6
STRING (EMBL)AGAP6
ZODIACAGAP6
Ontologies - Pathways
QuickGOQ5VW22
Ontology : AmiGOGTPase activator activity  positive regulation of GTPase activity  metal ion binding  
Ontology : EGO-EBIGTPase activator activity  positive regulation of GTPase activity  metal ion binding  
NDEx NetworkAGAP6
Atlas of Cancer Signalling NetworkAGAP6
Wikipedia pathwaysAGAP6
Orthology - Evolution
OrthoDB414189
GeneTree (enSembl)ENSG00000204149
Phylogenetic Trees/Animal Genes : TreeFamAGAP6
HOVERGENQ5VW22
HOGENOMQ5VW22
Homologs : HomoloGeneAGAP6
Homology/Alignments : Family Browser (UCSC)AGAP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGAP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGAP6
dbVarAGAP6
ClinVarAGAP6
1000_GenomesAGAP6 
Exome Variant ServerAGAP6
ExAC (Exome Aggregation Consortium)AGAP6 (select the gene name)
Genetic variants : HAPMAP414189
Genomic Variants (DGV)AGAP6 [DGVbeta]
DECIPHER (Syndromes)10:51748078-51770259  ENSG00000204149
CONAN: Copy Number AnalysisAGAP6 
Mutations
ICGC Data PortalAGAP6 
TCGA Data PortalAGAP6 
Broad Tumor PortalAGAP6
OASIS PortalAGAP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGAP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGAP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGAP6
DgiDB (Drug Gene Interaction Database)AGAP6
DoCM (Curated mutations)AGAP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGAP6 (select a term)
intoGenAGAP6
Cancer3DAGAP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAGAP6
Genetic Testing Registry AGAP6
NextProtQ5VW22 [Medical]
TSGene414189
GENETestsAGAP6
Huge Navigator AGAP6 [HugePedia]
snp3D : Map Gene to Disease414189
BioCentury BCIQAGAP6
ClinGenAGAP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414189
Chemical/Pharm GKB GenePA164715148
Clinical trialAGAP6
Miscellaneous
canSAR (ICR)AGAP6 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGAP6
EVEXAGAP6
GoPubMedAGAP6
iHOPAGAP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:54 CET 2017

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