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AGAP7P (ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene)

Identity

Alias (NCBI)AGAP-7
AGAP7
CTGLF4
bA109G10.1
HGNC (Hugo) AGAP7P
HGNC Alias symbbA109G10.1
HGNC Previous nameCTGLF4
 AGAP7
HGNC Previous namecentaurin, gamma-like family, member 4
 ArfGAP with GTPase domain, ankyrin repeat and PH domain 7
LocusID (NCBI) 653268
Atlas_Id 60191
Location 10q11.22  [Link to chromosome band 10q11]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)AGAP7P   23465
Cards
Entrez_Gene (NCBI)AGAP7P    ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene
AliasesAGAP-7; AGAP7; CTGLF4; bA109G10.1
GeneCards (Weizmann)AGAP7P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  AGAP7P [Vega]
TCGA cBioPortalAGAP7P
AceView (NCBI)AGAP7P
Genatlas (Paris)AGAP7P
SOURCE (Princeton)AGAP7P
Genetics Home Reference (NIH)AGAP7P
Genomic and cartography
GoldenPath hg38 (UCSC)AGAP7P  -  
GoldenPath hg19 (UCSC)AGAP7P  -  
GoldenPathAGAP7P - [CytoView hg19]  AGAP7P - [CytoView hg38]
genome Data Viewer NCBIAGAP7P [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA337655 AL040331 AW014387 BY996334
RefSeq transcript (Entrez)NM_001077685
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGAP7P
Gene ExpressionAGAP7P [ NCBI-GEO ]   AGAP7P [ EBI - ARRAY_EXPRESS ]   AGAP7P [ SEEK ]   AGAP7P [ MEM ]
Gene Expression Viewer (FireBrowse)AGAP7P [ Firebrowse - Broad ]
GenevisibleExpression of AGAP7P in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653268
GTEX Portal (Tissue expression)AGAP7P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VUJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VUJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VUJ5
Splice isoforms : SwissVarQ5VUJ5
PhosPhoSitePlusQ5VUJ5
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ARFGAP (PS50115)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    ARFGAP/RecO    ArfGAP_dom    ArfGAP_dom_sf    PH_domain   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    ArfGap (PF01412)   
Domain families : Pfam (NCBI)pfam12796    pfam01412   
Domain families : Smart (EMBL)ANK (SM00248)  ArfGap (SM00105)  PH (SM00233)  
Conserved Domain (NCBI)AGAP7P
Blocks (Seattle)AGAP7P
SuperfamilyQ5VUJ5
Peptide AtlasQ5VUJ5
IPIIPI00456856   IPI00942757   
Protein Interaction databases
DIP (DOE-UCLA)Q5VUJ5
IntAct (EBI)Q5VUJ5
BioGRIDAGAP7P
STRING (EMBL)AGAP7P
ZODIACAGAP7P
Ontologies - Pathways
QuickGOQ5VUJ5
Ontology : AmiGOGTPase activator activity  nucleus  positive regulation of GTPase activity  metal ion binding  
Ontology : EGO-EBIGTPase activator activity  nucleus  positive regulation of GTPase activity  metal ion binding  
NDEx NetworkAGAP7P
Atlas of Cancer Signalling NetworkAGAP7P
Wikipedia pathwaysAGAP7P
Orthology - Evolution
OrthoDB653268
Phylogenetic Trees/Animal Genes : TreeFamAGAP7P
HOGENOMQ5VUJ5
Homologs : HomoloGeneAGAP7P
Homology/Alignments : Family Browser (UCSC)AGAP7P
Gene fusions - Rearrangements
Fusion : QuiverAGAP7P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGAP7P [hg38]
dbVarAGAP7P
ClinVarAGAP7P
MonarchAGAP7P
1000_GenomesAGAP7P 
Exome Variant ServerAGAP7P
Varsome BrowserAGAP7P
Genomic Variants (DGV)AGAP7P [DGVbeta]
DECIPHERAGAP7P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGAP7P 
Mutations
ICGC Data PortalAGAP7P 
TCGA Data PortalAGAP7P 
Broad Tumor PortalAGAP7P
OASIS PortalAGAP7P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAGAP7P
BioMutasearch AGAP7P
DgiDB (Drug Gene Interaction Database)AGAP7P
DoCM (Curated mutations)AGAP7P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGAP7P (select a term)
intoGenAGAP7P
Cancer3DAGAP7P(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETAGAP7P
MedgenAGAP7P
Genetic Testing Registry AGAP7P
NextProtQ5VUJ5 [Medical]
GENETestsAGAP7P
Target ValidationAGAP7P
Huge Navigator AGAP7P [HugePedia]
ClinGenAGAP7P
Clinical trials, drugs, therapy
MyCancerGenomeAGAP7P
Protein Interactions : CTD
Pharm GKB GenePA164715167
Clinical trialAGAP7P
Miscellaneous
canSAR (ICR)AGAP7P (select the gene name)
HarmonizomeAGAP7P
DataMed IndexAGAP7P
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGAP7P
EVEXAGAP7P
GoPubMedAGAP7P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:45:21 CET 2020

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