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AGAP7P (ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene)

Identity

Alias_namesCTGLF4
AGAP7
centaurin, gamma-like family, member 4
ArfGAP with GTPase domain, ankyrin repeat and PH domain 7
Alias_symbol (synonym)bA109G10.1
Other aliasAGAP-7
HGNC (Hugo) AGAP7P
LocusID (NCBI) 653268
Atlas_Id 60191
Location 10q11.22  [Link to chromosome band 10q11]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGAP7P   23465
Cards
Entrez_Gene (NCBI)AGAP7P  653268  ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene
AliasesAGAP-7; AGAP7; CTGLF4; bA109G10.1
GeneCards (Weizmann)AGAP7P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  AGAP7P [Vega]
TCGA cBioPortalAGAP7P
AceView (NCBI)AGAP7P
Genatlas (Paris)AGAP7P
WikiGenes653268
SOURCE (Princeton)AGAP7P
Genetics Home Reference (NIH)AGAP7P
Genomic and cartography
GoldenPath hg38 (UCSC)AGAP7P  -  
GoldenPath hg19 (UCSC)AGAP7P  -  
EnsemblAGAP7P - [CytoView hg19]  AGAP7P - [CytoView hg38]
Mapping of homologs : NCBIAGAP7P [Mapview hg19]  AGAP7P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA337655 AL040331 AW014387 BY996334
RefSeq transcript (Entrez)NM_001077685
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGAP7P
Cluster EST : UnigeneHs.528346 [ NCBI ]
CGAP (NCI)Hs.528346
Gene ExpressionAGAP7P [ NCBI-GEO ]   AGAP7P [ EBI - ARRAY_EXPRESS ]   AGAP7P [ SEEK ]   AGAP7P [ MEM ]
Gene Expression Viewer (FireBrowse)AGAP7P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653268
GTEX Portal (Tissue expression)AGAP7P
Protein : pattern, domain, 3D structure
Q5VUJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VUJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VUJ5
Splice isoforms : SwissVarQ5VUJ5
PhosPhoSitePlusQ5VUJ5
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ARFGAP (PS50115)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    ArfGAP    PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    ArfGap (PF01412)   
Domain families : Pfam (NCBI)pfam12796    pfam01412   
Domain families : Smart (EMBL)ANK (SM00248)  ArfGap (SM00105)  PH (SM00233)  
Conserved Domain (NCBI)AGAP7P
DMDM Disease mutations653268
Blocks (Seattle)AGAP7P
SuperfamilyQ5VUJ5
Peptide AtlasQ5VUJ5
IPIIPI00456856   IPI00942757   
Protein Interaction databases
DIP (DOE-UCLA)Q5VUJ5
IntAct (EBI)Q5VUJ5
BioGRIDAGAP7P
STRING (EMBL)AGAP7P
ZODIACAGAP7P
Ontologies - Pathways
QuickGOQ5VUJ5
Ontology : AmiGOGTPase activator activity  positive regulation of GTPase activity  metal ion binding  
Ontology : EGO-EBIGTPase activator activity  positive regulation of GTPase activity  metal ion binding  
NDEx NetworkAGAP7P
Atlas of Cancer Signalling NetworkAGAP7P
Wikipedia pathwaysAGAP7P
Orthology - Evolution
OrthoDB653268
Phylogenetic Trees/Animal Genes : TreeFamAGAP7P
HOVERGENQ5VUJ5
HOGENOMQ5VUJ5
Homologs : HomoloGeneAGAP7P
Homology/Alignments : Family Browser (UCSC)AGAP7P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGAP7P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGAP7P
dbVarAGAP7P
ClinVarAGAP7P
1000_GenomesAGAP7P 
Exome Variant ServerAGAP7P
ExAC (Exome Aggregation Consortium)AGAP7P (select the gene name)
Genetic variants : HAPMAP653268
Genomic Variants (DGV)AGAP7P [DGVbeta]
DECIPHERAGAP7P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGAP7P 
Mutations
ICGC Data PortalAGAP7P 
TCGA Data PortalAGAP7P 
Broad Tumor PortalAGAP7P
OASIS PortalAGAP7P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAGAP7P
BioMutasearch AGAP7P
DgiDB (Drug Gene Interaction Database)AGAP7P
DoCM (Curated mutations)AGAP7P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGAP7P (select a term)
intoGenAGAP7P
Cancer3DAGAP7P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAGAP7P
Genetic Testing Registry AGAP7P
NextProtQ5VUJ5 [Medical]
TSGene653268
GENETestsAGAP7P
Target ValidationAGAP7P
Huge Navigator AGAP7P [HugePedia]
snp3D : Map Gene to Disease653268
BioCentury BCIQAGAP7P
ClinGenAGAP7P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653268
Chemical/Pharm GKB GenePA164715167
Clinical trialAGAP7P
Miscellaneous
canSAR (ICR)AGAP7P (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGAP7P
EVEXAGAP7P
GoPubMedAGAP7P
iHOPAGAP7P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:02 CEST 2017

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