Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AGAP9 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 9)

Identity

Alias_namesCTGLF6
centaurin, gamma-like family, member 6
Alias_symbol (synonym)bA301J7.2
FLJ00312
Other aliasAGAP-9
HGNC (Hugo) AGAP9
LocusID (NCBI) 642517
Atlas_Id 60192
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 47501854 and ends at 47523638 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AGAP9 (10q11.22) / SERPINA1 (14q32.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGAP9   23463
Cards
Entrez_Gene (NCBI)AGAP9  642517  ArfGAP with GTPase domain, ankyrin repeat and PH domain 9
AliasesAGAP-9; CTGLF6; bA301J7.2
GeneCards (Weizmann)AGAP9
Ensembl hg19 (Hinxton)ENSG00000204172 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204172 [Gene_View]  chr10:47501854-47523638 [Contig_View]  AGAP9 [Vega]
ICGC DataPortalENSG00000204172
TCGA cBioPortalAGAP9
AceView (NCBI)AGAP9
Genatlas (Paris)AGAP9
WikiGenes642517
SOURCE (Princeton)AGAP9
Genetics Home Reference (NIH)AGAP9
Genomic and cartography
GoldenPath hg38 (UCSC)AGAP9  -     chr10:47501854-47523638 -  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGAP9  -     10q11.22   [Description]    (hg19-Feb_2009)
EnsemblAGAP9 - 10q11.22 [CytoView hg19]  AGAP9 - 10q11.22 [CytoView hg38]
Mapping of homologs : NCBIAGAP9 [Mapview hg19]  AGAP9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096908 AK160375 BC020871 BC032492 BC171845
RefSeq transcript (Entrez)NM_001190810
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGAP9
Cluster EST : UnigeneHs.742298 [ NCBI ]
CGAP (NCI)Hs.742298
Alternative Splicing GalleryENSG00000204172
Gene ExpressionAGAP9 [ NCBI-GEO ]   AGAP9 [ EBI - ARRAY_EXPRESS ]   AGAP9 [ SEEK ]   AGAP9 [ MEM ]
Gene Expression Viewer (FireBrowse)AGAP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642517
GTEX Portal (Tissue expression)AGAP9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTM2
Splice isoforms : SwissVarQ5VTM2
PhosPhoSitePlusQ5VTM2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ARFGAP (PS50115)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Ankyrin_rpt-contain_dom    ArfGAP    P-loop_NTPase    PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)ArfGap (PF01412)   
Domain families : Pfam (NCBI)pfam01412   
Domain families : Smart (EMBL)ArfGap (SM00105)  PH (SM00233)  
Conserved Domain (NCBI)AGAP9
DMDM Disease mutations642517
Blocks (Seattle)AGAP9
SuperfamilyQ5VTM2
Human Protein AtlasENSG00000204172
Peptide AtlasQ5VTM2
IPIIPI00747142   IPI00939971   IPI00943298   
Protein Interaction databases
DIP (DOE-UCLA)Q5VTM2
IntAct (EBI)Q5VTM2
FunCoupENSG00000204172
BioGRIDAGAP9
STRING (EMBL)AGAP9
ZODIACAGAP9
Ontologies - Pathways
QuickGOQ5VTM2
Ontology : AmiGOGTPase activator activity  positive regulation of GTPase activity  metal ion binding  
Ontology : EGO-EBIGTPase activator activity  positive regulation of GTPase activity  metal ion binding  
NDEx NetworkAGAP9
Atlas of Cancer Signalling NetworkAGAP9
Wikipedia pathwaysAGAP9
Orthology - Evolution
OrthoDB642517
GeneTree (enSembl)ENSG00000204172
Phylogenetic Trees/Animal Genes : TreeFamAGAP9
HOVERGENQ5VTM2
HOGENOMQ5VTM2
Homologs : HomoloGeneAGAP9
Homology/Alignments : Family Browser (UCSC)AGAP9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGAP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGAP9
dbVarAGAP9
ClinVarAGAP9
1000_GenomesAGAP9 
Exome Variant ServerAGAP9
ExAC (Exome Aggregation Consortium)AGAP9 (select the gene name)
Genetic variants : HAPMAP642517
Genomic Variants (DGV)AGAP9 [DGVbeta]
DECIPHERAGAP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGAP9 
Mutations
ICGC Data PortalAGAP9 
TCGA Data PortalAGAP9 
Broad Tumor PortalAGAP9
OASIS PortalAGAP9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAGAP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGAP9
DgiDB (Drug Gene Interaction Database)AGAP9
DoCM (Curated mutations)AGAP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGAP9 (select a term)
intoGenAGAP9
Cancer3DAGAP9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAGAP9
Genetic Testing Registry AGAP9
NextProtQ5VTM2 [Medical]
TSGene642517
GENETestsAGAP9
Target ValidationAGAP9
Huge Navigator AGAP9 [HugePedia]
snp3D : Map Gene to Disease642517
BioCentury BCIQAGAP9
ClinGenAGAP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642517
Chemical/Pharm GKB GenePA164715169
Clinical trialAGAP9
Miscellaneous
canSAR (ICR)AGAP9 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGAP9
EVEXAGAP9
GoPubMedAGAP9
iHOPAGAP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:37:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.