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AGAP9 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 9)

Identity

Alias (NCBI)AGAP-9
CTGLF6
bA301J7.2
HGNC (Hugo) AGAP9
HGNC Alias symbbA301J7.2
FLJ00312
HGNC Previous nameCTGLF6
HGNC Previous namecentaurin, gamma-like family, member 6
LocusID (NCBI) 642517
Atlas_Id 60192
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 47501854 and ends at 47523638 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGAP9 (10q11.22) / SERPINA1 (14q32.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)AGAP9   23463
Cards
Entrez_Gene (NCBI)AGAP9    ArfGAP with GTPase domain, ankyrin repeat and PH domain 9
AliasesAGAP-9; CTGLF6; bA301J7.2
GeneCards (Weizmann)AGAP9
Ensembl hg19 (Hinxton)ENSG00000204172 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204172 [Gene_View]  ENSG00000204172 [Sequence]  chr10:47501854-47523638 [Contig_View]  AGAP9 [Vega]
ICGC DataPortalENSG00000204172
TCGA cBioPortalAGAP9
AceView (NCBI)AGAP9
Genatlas (Paris)AGAP9
SOURCE (Princeton)AGAP9
Genetics Home Reference (NIH)AGAP9
Genomic and cartography
GoldenPath hg38 (UCSC)AGAP9  -     chr10:47501854-47523638 -  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGAP9  -     10q11.22   [Description]    (hg19-Feb_2009)
GoldenPathAGAP9 - 10q11.22 [CytoView hg19]  AGAP9 - 10q11.22 [CytoView hg38]
ImmunoBaseENSG00000204172
Genome Data Viewer NCBIAGAP9 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK096908 AK160375 BC020871 BC032492 BC171845
RefSeq transcript (Entrez)NM_001190810
Consensus coding sequences : CCDS (NCBI)AGAP9
Gene ExpressionAGAP9 [ NCBI-GEO ]   AGAP9 [ EBI - ARRAY_EXPRESS ]   AGAP9 [ SEEK ]   AGAP9 [ MEM ]
Gene Expression Viewer (FireBrowse)AGAP9 [ Firebrowse - Broad ]
GenevisibleExpression of AGAP9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642517
GTEX Portal (Tissue expression)AGAP9
Human Protein AtlasENSG00000204172-AGAP9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTM2
PhosPhoSitePlusQ5VTM2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ARFGAP (PS50115)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    ARFGAP/RecO    ArfGAP_dom    ArfGAP_dom_sf    P-loop_NTPase    PH_domain   
Domain families : Pfam (Sanger)ArfGap (PF01412)   
Domain families : Pfam (NCBI)pfam01412   
Domain families : Smart (EMBL)ArfGap (SM00105)  PH (SM00233)  
Conserved Domain (NCBI)AGAP9
SuperfamilyQ5VTM2
AlphaFold pdb e-kbQ5VTM2   
Human Protein Atlas [tissue]ENSG00000204172-AGAP9 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5VTM2
IntAct (EBI)Q5VTM2
BioGRIDAGAP9
STRING (EMBL)AGAP9
ZODIACAGAP9
Ontologies - Pathways
QuickGOQ5VTM2
Ontology : AmiGOGTPase activator activity  nucleus  metal ion binding  regulation of catalytic activity  
Ontology : EGO-EBIGTPase activator activity  nucleus  metal ion binding  regulation of catalytic activity  
NDEx NetworkAGAP9
Atlas of Cancer Signalling NetworkAGAP9
Wikipedia pathwaysAGAP9
Orthology - Evolution
OrthoDB642517
GeneTree (enSembl)ENSG00000204172
Phylogenetic Trees/Animal Genes : TreeFamAGAP9
Homologs : HomoloGeneAGAP9
Homology/Alignments : Family Browser (UCSC)AGAP9
Gene fusions - Rearrangements
Fusion : QuiverAGAP9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGAP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGAP9
dbVarAGAP9
ClinVarAGAP9
MonarchAGAP9
1000_GenomesAGAP9 
Exome Variant ServerAGAP9
GNOMAD BrowserENSG00000204172
Varsome BrowserAGAP9
ACMGAGAP9 variants
VarityQ5VTM2
Genomic Variants (DGV)AGAP9 [DGVbeta]
DECIPHERAGAP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGAP9 
Mutations
ICGC Data PortalAGAP9 
TCGA Data PortalAGAP9 
Broad Tumor PortalAGAP9
OASIS PortalAGAP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGAP9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAGAP9
Mutations and Diseases : HGMDAGAP9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaAGAP9
DgiDB (Drug Gene Interaction Database)AGAP9
DoCM (Curated mutations)AGAP9
CIViC (Clinical Interpretations of Variants in Cancer)AGAP9
Cancer3DAGAP9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETAGAP9
MedgenAGAP9
Genetic Testing Registry AGAP9
NextProtQ5VTM2 [Medical]
GENETestsAGAP9
Target ValidationAGAP9
Huge Navigator AGAP9 [HugePedia]
ClinGenAGAP9
Clinical trials, drugs, therapy
MyCancerGenomeAGAP9
Protein Interactions : CTDAGAP9
Pharm GKB GenePA164715169
PharosQ5VTM2
Clinical trialAGAP9
Miscellaneous
canSAR (ICR)AGAP9
HarmonizomeAGAP9
DataMed IndexAGAP9
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAGAP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:41:42 CEST 2021

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