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AGBL1 (ATP/GTP binding protein-like 1)

Identity

Alias_symbol (synonym)FLJ32310
CCP4
Other aliasFECD8
HGNC (Hugo) AGBL1
LocusID (NCBI) 123624
Atlas_Id 54110
Location 15q25.3  [Link to chromosome band 15q25]
Location_base_pair Starts at 86685242 and ends at 87572283 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AGBL1 (15q25.3) / AGBL1 (15q25.3)AGBL1 (15q25.3) / SNX19 (11q24.3)CHD2 (15q26.1) / AGBL1 (15q25.3)
PLD1 (3q26.31) / AGBL1 (15q25.3)PTPN9 (15q24.2) / AGBL1 (15q25.3)THBS1 (15q14) / AGBL1 (15q25.3)
PTPN9 15q24.2 / AGBL1 15q25.3THBS1 15q14 / AGBL1 15q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGBL1   26504
Cards
Entrez_Gene (NCBI)AGBL1  123624  ATP/GTP binding protein-like 1
AliasesCCP4; FECD8
GeneCards (Weizmann)AGBL1
Ensembl hg19 (Hinxton)ENSG00000166748 [Gene_View]  chr15:86685242-87572283 [Contig_View]  AGBL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166748 [Gene_View]  chr15:86685242-87572283 [Contig_View]  AGBL1 [Vega]
ICGC DataPortalENSG00000166748
TCGA cBioPortalAGBL1
AceView (NCBI)AGBL1
Genatlas (Paris)AGBL1
WikiGenes123624
SOURCE (Princeton)AGBL1
Genetics Home Reference (NIH)AGBL1
Genomic and cartography
GoldenPath hg19 (UCSC)AGBL1  -     chr15:86685242-87572283 +  15q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AGBL1  -     15q25.3   [Description]    (hg38-Dec_2013)
EnsemblAGBL1 - 15q25.3 [CytoView hg19]  AGBL1 - 15q25.3 [CytoView hg38]
Mapping of homologs : NCBIAGBL1 [Mapview hg19]  AGBL1 [Mapview hg38]
OMIM615496   615523   
Gene and transcription
Genbank (Entrez)AK056872 BC128152 DA695799 DV080155 DV080218
RefSeq transcript (Entrez)NM_152336
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_033836 NT_010194 NW_004929399
Consensus coding sequences : CCDS (NCBI)AGBL1
Cluster EST : UnigeneHs.679833 [ NCBI ]
CGAP (NCI)Hs.679833
Alternative Splicing GalleryENSG00000166748
Gene ExpressionAGBL1 [ NCBI-GEO ]   AGBL1 [ EBI - ARRAY_EXPRESS ]   AGBL1 [ SEEK ]   AGBL1 [ MEM ]
Gene Expression Viewer (FireBrowse)AGBL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123624
GTEX Portal (Tissue expression)AGBL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MI9
Splice isoforms : SwissVarQ96MI9
Catalytic activity : Enzyme3.4.17.- [ Enzyme-Expasy ]   3.4.17.-3.4.17.- [ IntEnz-EBI ]   3.4.17.- [ BRENDA ]   3.4.17.- [ KEGG ]   
PhosPhoSitePlusQ96MI9
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Peptidase_M14   
Domain families : Pfam (Sanger)Peptidase_M14 (PF00246)   
Domain families : Pfam (NCBI)pfam00246   
Conserved Domain (NCBI)AGBL1
DMDM Disease mutations123624
Blocks (Seattle)AGBL1
SuperfamilyQ96MI9
Human Protein AtlasENSG00000166748
Peptide AtlasQ96MI9
HPRD07115
IPIIPI00783246   IPI00867537   IPI00053232   
Protein Interaction databases
DIP (DOE-UCLA)Q96MI9
IntAct (EBI)Q96MI9
FunCoupENSG00000166748
BioGRIDAGBL1
STRING (EMBL)AGBL1
ZODIACAGBL1
Ontologies - Pathways
QuickGOQ96MI9
Ontology : AmiGOmetallocarboxypeptidase activity  cytosol  proteolysis  zinc ion binding  tubulin binding  C-terminal protein deglutamylation  protein side chain deglutamylation  
Ontology : EGO-EBImetallocarboxypeptidase activity  cytosol  proteolysis  zinc ion binding  tubulin binding  C-terminal protein deglutamylation  protein side chain deglutamylation  
NDEx NetworkAGBL1
Atlas of Cancer Signalling NetworkAGBL1
Wikipedia pathwaysAGBL1
Orthology - Evolution
OrthoDB123624
GeneTree (enSembl)ENSG00000166748
Phylogenetic Trees/Animal Genes : TreeFamAGBL1
HOVERGENQ96MI9
HOGENOMQ96MI9
Homologs : HomoloGeneAGBL1
Homology/Alignments : Family Browser (UCSC)AGBL1
Gene fusions - Rearrangements
Fusion : MitelmanPLD1/AGBL1 [3q26.31/15q25.3]  [t(3;15)(q26;q25)]  
Fusion : MitelmanPTPN9/AGBL1 [15q24.2/15q25.3]  [t(15;15)(q24;q25)]  
Fusion : MitelmanTHBS1/AGBL1 [15q14/15q25.3]  [t(15;15)(q14;q25)]  
Fusion: TCGAPTPN9 15q24.2 AGBL1 15q25.3 BRCA
Fusion: TCGATHBS1 15q14 AGBL1 15q25.3 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGBL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGBL1
dbVarAGBL1
ClinVarAGBL1
1000_GenomesAGBL1 
Exome Variant ServerAGBL1
ExAC (Exome Aggregation Consortium)AGBL1 (select the gene name)
Genetic variants : HAPMAP123624
Genomic Variants (DGV)AGBL1 [DGVbeta]
DECIPHER (Syndromes)15:86685242-87572283  ENSG00000166748
CONAN: Copy Number AnalysisAGBL1 
Mutations
ICGC Data PortalAGBL1 
TCGA Data PortalAGBL1 
Broad Tumor PortalAGBL1
OASIS PortalAGBL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGBL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGBL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGBL1
DgiDB (Drug Gene Interaction Database)AGBL1
DoCM (Curated mutations)AGBL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGBL1 (select a term)
intoGenAGBL1
Cancer3DAGBL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615496    615523   
Orphanet13991   
MedgenAGBL1
Genetic Testing Registry AGBL1
NextProtQ96MI9 [Medical]
TSGene123624
GENETestsAGBL1
Huge Navigator AGBL1 [HugePedia]
snp3D : Map Gene to Disease123624
BioCentury BCIQAGBL1
ClinGenAGBL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123624
Chemical/Pharm GKB GenePA134923894
Clinical trialAGBL1
Miscellaneous
canSAR (ICR)AGBL1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGBL1
EVEXAGBL1
GoPubMedAGBL1
iHOPAGBL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:55:12 CET 2017

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