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AGBL1 (AGBL carboxypeptidase 1)

Identity

Alias (NCBI)CCP4
FECD8
HGNC (Hugo) AGBL1
HGNC Alias symbFLJ32310
CCP4
HGNC Alias namecytosolic carboxypeptidase 4
HGNC Previous nameATP/GTP binding protein like 1
LocusID (NCBI) 123624
Atlas_Id 54110
Location 15q25.3  [Link to chromosome band 15q25]
Location_base_pair Starts at 86079620 and ends at 87029052 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGBL1 (15q25.3) / AGBL1 (15q25.3)AGBL1 (15q25.3) / SNX19 (11q24.3)CHD2 (15q26.1) / AGBL1 (15q25.3)
PLD1 (3q26.31) / AGBL1 (15q25.3)PTPN9 (15q24.2) / AGBL1 (15q25.3)THBS1 (15q14) / AGBL1 (15q25.3)
PTPN9 15q24.2 / AGBL1 15q25.3THBS1 15q14 / AGBL1 15q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)AGBL1   26504
Cards
Entrez_Gene (NCBI)AGBL1    AGBL carboxypeptidase 1
AliasesCCP4; FECD8
GeneCards (Weizmann)AGBL1
Ensembl hg19 (Hinxton)ENSG00000273540 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273540 [Gene_View]  ENSG00000273540 [Sequence]  chr15:86079620-87029052 [Contig_View]  AGBL1 [Vega]
ICGC DataPortalENSG00000273540
TCGA cBioPortalAGBL1
AceView (NCBI)AGBL1
Genatlas (Paris)AGBL1
SOURCE (Princeton)AGBL1
Genetics Home Reference (NIH)AGBL1
Genomic and cartography
GoldenPath hg38 (UCSC)AGBL1  -     chr15:86079620-87029052 +  15q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGBL1  -     15q25.3   [Description]    (hg19-Feb_2009)
GoldenPathAGBL1 - 15q25.3 [CytoView hg19]  AGBL1 - 15q25.3 [CytoView hg38]
ImmunoBaseENSG00000273540
Genome Data Viewer NCBIAGBL1 [Mapview hg19]  
OMIM615496   615523   
Gene and transcription
Genbank (Entrez)AK056872 AK096897 AL133446 BC128152 DA695799
RefSeq transcript (Entrez)NM_001386094 NM_152336
Consensus coding sequences : CCDS (NCBI)AGBL1
Gene ExpressionAGBL1 [ NCBI-GEO ]   AGBL1 [ EBI - ARRAY_EXPRESS ]   AGBL1 [ SEEK ]   AGBL1 [ MEM ]
Gene Expression Viewer (FireBrowse)AGBL1 [ Firebrowse - Broad ]
GenevisibleExpression of AGBL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123624
GTEX Portal (Tissue expression)AGBL1
Human Protein AtlasENSG00000273540-AGBL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MI9
Catalytic activity : Enzyme3.4.17.- [ Enzyme-Expasy ]   3.4.17.-3.4.17.- [ IntEnz-EBI ]   3.4.17.- [ BRENDA ]   3.4.17.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ96MI9
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Pepdidase_M14_N    Peptidase_M14   
Domain families : Pfam (Sanger)Pepdidase_M14_N (PF18027)    Peptidase_M14 (PF00246)   
Domain families : Pfam (NCBI)pfam18027    pfam00246   
Conserved Domain (NCBI)AGBL1
SuperfamilyQ96MI9
AlphaFold pdb e-kbQ96MI9   
Human Protein Atlas [tissue]ENSG00000273540-AGBL1 [tissue]
HPRD07115
Protein Interaction databases
DIP (DOE-UCLA)Q96MI9
IntAct (EBI)Q96MI9
BioGRIDAGBL1
STRING (EMBL)AGBL1
ZODIACAGBL1
Ontologies - Pathways
QuickGOQ96MI9
Ontology : AmiGOmetallocarboxypeptidase activity  cytosol  proteolysis  zinc ion binding  tubulin binding  C-terminal protein deglutamylation  C-terminal protein deglutamylation  protein side chain deglutamylation  protein side chain deglutamylation  
Ontology : EGO-EBImetallocarboxypeptidase activity  cytosol  proteolysis  zinc ion binding  tubulin binding  C-terminal protein deglutamylation  C-terminal protein deglutamylation  protein side chain deglutamylation  protein side chain deglutamylation  
NDEx NetworkAGBL1
Atlas of Cancer Signalling NetworkAGBL1
Wikipedia pathwaysAGBL1
Orthology - Evolution
OrthoDB123624
GeneTree (enSembl)ENSG00000273540
Phylogenetic Trees/Animal Genes : TreeFamAGBL1
Homologs : HomoloGeneAGBL1
Homology/Alignments : Family Browser (UCSC)AGBL1
Gene fusions - Rearrangements
Fusion : MitelmanPLD1/AGBL1 [3q26.31/15q25.3]  
Fusion : MitelmanPTPN9/AGBL1 [15q24.2/15q25.3]  
Fusion : MitelmanTHBS1/AGBL1 [15q14/15q25.3]  
Fusion : QuiverAGBL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGBL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGBL1
dbVarAGBL1
ClinVarAGBL1
MonarchAGBL1
1000_GenomesAGBL1 
Exome Variant ServerAGBL1
GNOMAD BrowserENSG00000273540
Varsome BrowserAGBL1
ACMGAGBL1 variants
VarityQ96MI9
Genomic Variants (DGV)AGBL1 [DGVbeta]
DECIPHERAGBL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGBL1 
Mutations
ICGC Data PortalAGBL1 
TCGA Data PortalAGBL1 
Broad Tumor PortalAGBL1
OASIS PortalAGBL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGBL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAGBL1
Mutations and Diseases : HGMDAGBL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaAGBL1
DgiDB (Drug Gene Interaction Database)AGBL1
DoCM (Curated mutations)AGBL1
CIViC (Clinical Interpretations of Variants in Cancer)AGBL1
Cancer3DAGBL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615496    615523   
Orphanet13991   
DisGeNETAGBL1
MedgenAGBL1
Genetic Testing Registry AGBL1
NextProtQ96MI9 [Medical]
GENETestsAGBL1
Target ValidationAGBL1
Huge Navigator AGBL1 [HugePedia]
ClinGenAGBL1
Clinical trials, drugs, therapy
MyCancerGenomeAGBL1
Protein Interactions : CTDAGBL1
Pharm GKB GenePA134923894
PharosQ96MI9
Clinical trialAGBL1
Miscellaneous
canSAR (ICR)AGBL1
HarmonizomeAGBL1
DataMed IndexAGBL1
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAGBL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 14:58:47 CEST 2021

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