Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AGBL2 (ATP/GTP binding protein like 2)

Identity

Alias_symbol (synonym)FLJ23598
CCP2
Other alias
HGNC (Hugo) AGBL2
LocusID (NCBI) 79841
Atlas_Id 52204
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 47659591 and ends at 47715376 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGBL2 (11p11.2) / C6orf10 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGBL2   26296
Cards
Entrez_Gene (NCBI)AGBL2  79841  ATP/GTP binding protein like 2
AliasesCCP2
GeneCards (Weizmann)AGBL2
Ensembl hg19 (Hinxton)ENSG00000165923 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165923 [Gene_View]  ENSG00000165923 [Sequence]  chr11:47659591-47715376 [Contig_View]  AGBL2 [Vega]
ICGC DataPortalENSG00000165923
TCGA cBioPortalAGBL2
AceView (NCBI)AGBL2
Genatlas (Paris)AGBL2
WikiGenes79841
SOURCE (Princeton)AGBL2
Genetics Home Reference (NIH)AGBL2
Genomic and cartography
GoldenPath hg38 (UCSC)AGBL2  -     chr11:47659591-47715376 -  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGBL2  -     11p11.2   [Description]    (hg19-Feb_2009)
AGBL2 - 11p11.2 [CytoView hg19]  AGBL2 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIAGBL2 [Mapview hg19]  AGBL2 [Mapview hg38]
OMIM617345   
Gene and transcription
Genbank (Entrez)AK027251 AK056687 AK223171 AK223176 AK303066
RefSeq transcript (Entrez)NM_024783
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGBL2
Cluster EST : UnigeneHs.147377 [ NCBI ]
CGAP (NCI)Hs.147377
Alternative Splicing GalleryENSG00000165923
Gene ExpressionAGBL2 [ NCBI-GEO ]   AGBL2 [ EBI - ARRAY_EXPRESS ]   AGBL2 [ SEEK ]   AGBL2 [ MEM ]
Gene Expression Viewer (FireBrowse)AGBL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79841
GTEX Portal (Tissue expression)AGBL2
Human Protein AtlasENSG00000165923-AGBL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5U5Z8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5U5Z8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5U5Z8
Splice isoforms : SwissVarQ5U5Z8
Catalytic activity : Enzyme3.4.17.- [ Enzyme-Expasy ]   3.4.17.-3.4.17.- [ IntEnz-EBI ]   3.4.17.- [ BRENDA ]   3.4.17.- [ KEGG ]   
PhosPhoSitePlusQ5U5Z8
Domains : Interpro (EBI)Peptidase_M14   
Domain families : Pfam (Sanger)Peptidase_M14 (PF00246)   
Domain families : Pfam (NCBI)pfam00246   
Conserved Domain (NCBI)AGBL2
DMDM Disease mutations79841
Blocks (Seattle)AGBL2
SuperfamilyQ5U5Z8
Human Protein Atlas [tissue]ENSG00000165923-AGBL2 [tissue]
Peptide AtlasQ5U5Z8
HPRD08039
IPIIPI00478928   IPI00844064   IPI00844012   IPI00911102   IPI00328147   IPI00910622   IPI00979579   IPI00979362   IPI00979968   IPI00979088   
Protein Interaction databases
DIP (DOE-UCLA)Q5U5Z8
IntAct (EBI)Q5U5Z8
FunCoupENSG00000165923
BioGRIDAGBL2
STRING (EMBL)AGBL2
ZODIACAGBL2
Ontologies - Pathways
QuickGOQ5U5Z8
Ontology : AmiGOmetallocarboxypeptidase activity  centriole  cytosol  proteolysis  zinc ion binding  protein side chain deglutamylation  ciliary basal body  
Ontology : EGO-EBImetallocarboxypeptidase activity  centriole  cytosol  proteolysis  zinc ion binding  protein side chain deglutamylation  ciliary basal body  
NDEx NetworkAGBL2
Atlas of Cancer Signalling NetworkAGBL2
Wikipedia pathwaysAGBL2
Orthology - Evolution
OrthoDB79841
GeneTree (enSembl)ENSG00000165923
Phylogenetic Trees/Animal Genes : TreeFamAGBL2
HOGENOMQ5U5Z8
Homologs : HomoloGeneAGBL2
Homology/Alignments : Family Browser (UCSC)AGBL2
Gene fusions - Rearrangements
Fusion : QuiverAGBL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGBL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGBL2
dbVarAGBL2
ClinVarAGBL2
1000_GenomesAGBL2 
Exome Variant ServerAGBL2
ExAC (Exome Aggregation Consortium)ENSG00000165923
GNOMAD BrowserENSG00000165923
Varsome BrowserAGBL2
Genetic variants : HAPMAP79841
Genomic Variants (DGV)AGBL2 [DGVbeta]
DECIPHERAGBL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGBL2 
Mutations
ICGC Data PortalAGBL2 
TCGA Data PortalAGBL2 
Broad Tumor PortalAGBL2
OASIS PortalAGBL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGBL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGBL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGBL2
DgiDB (Drug Gene Interaction Database)AGBL2
DoCM (Curated mutations)AGBL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGBL2 (select a term)
intoGenAGBL2
Cancer3DAGBL2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617345   
Orphanet
DisGeNETAGBL2
MedgenAGBL2
Genetic Testing Registry AGBL2
NextProtQ5U5Z8 [Medical]
TSGene79841
GENETestsAGBL2
Target ValidationAGBL2
Huge Navigator AGBL2 [HugePedia]
snp3D : Map Gene to Disease79841
BioCentury BCIQAGBL2
ClinGenAGBL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79841
Chemical/Pharm GKB GenePA142672634
Clinical trialAGBL2
Miscellaneous
canSAR (ICR)AGBL2 (select the gene name)
DataMed IndexAGBL2
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGBL2
EVEXAGBL2
GoPubMedAGBL2
iHOPAGBL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 21 15:35:19 CET 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.