Atlas of Genetics and Cytogenetics in Oncology and Haematology

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AGBL3 (ATP/GTP binding protein like 3)

Identity

Alias (NCBI)CCP3
HGNC (Hugo) AGBL3
HGNC Alias symbMGC32955
CCP3
LocusID (NCBI) 340351
Atlas_Id 60194
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 134986508 and ends at 135135778 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATXN7L1 (7q22.3) / AGBL3 (7q33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(7;7)(q22;q33) ATXN7L1/AGBL3

External links

Nomenclature
HGNC (Hugo)AGBL3   27981
Cards
Entrez_Gene (NCBI)AGBL3  340351  ATP/GTP binding protein like 3
AliasesCCP3
GeneCards (Weizmann)AGBL3
Ensembl hg19 (Hinxton)ENSG00000146856 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146856 [Gene_View]  ENSG00000146856 [Sequence]  chr7:134986508-135135778 [Contig_View]  AGBL3 [Vega]
ICGC DataPortalENSG00000146856
TCGA cBioPortalAGBL3
AceView (NCBI)AGBL3
Genatlas (Paris)AGBL3
WikiGenes340351
SOURCE (Princeton)AGBL3
Genetics Home Reference (NIH)AGBL3
Genomic and cartography
GoldenPath hg38 (UCSC)AGBL3  -     chr7:134986508-135135778 +  7q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGBL3  -     7q33   [Description]    (hg19-Feb_2009)
GoldenPathAGBL3 - 7q33 [CytoView hg19]  AGBL3 - 7q33 [CytoView hg38]
ImmunoBaseENSG00000146856
genome Data Viewer NCBIAGBL3 [Mapview hg19]  
OMIM617346   
Gene and transcription
Genbank (Entrez)AA707617 AK021841 AK023045 AK302827 AK311252
RefSeq transcript (Entrez)NM_001345850 NM_001345851 NM_001345852 NM_001345853 NM_001367811 NM_001367812 NM_001367813 NM_001367814 NM_001367815 NM_001367816 NM_001367817 NM_001367818 NM_001367819 NM_178563
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGBL3
Alternative Splicing GalleryENSG00000146856
Gene ExpressionAGBL3 [ NCBI-GEO ]   AGBL3 [ EBI - ARRAY_EXPRESS ]   AGBL3 [ SEEK ]   AGBL3 [ MEM ]
Gene Expression Viewer (FireBrowse)AGBL3 [ Firebrowse - Broad ]
GenevisibleExpression of AGBL3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340351
GTEX Portal (Tissue expression)AGBL3
Human Protein AtlasENSG00000146856-AGBL3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEM8
Splice isoforms : SwissVarQ8NEM8
Catalytic activity : Enzyme3.4.17.- [ Enzyme-Expasy ]   3.4.17.-3.4.17.- [ IntEnz-EBI ]   3.4.17.- [ BRENDA ]   3.4.17.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ8NEM8
Domains : Interpro (EBI)Pepdidase_M14_N    Peptidase_M14   
Domain families : Pfam (Sanger)Pepdidase_M14_N (PF18027)    Peptidase_M14 (PF00246)   
Domain families : Pfam (NCBI)pfam18027    pfam00246   
Conserved Domain (NCBI)AGBL3
DMDM Disease mutations340351
Blocks (Seattle)AGBL3
SuperfamilyQ8NEM8
Human Protein Atlas [tissue]ENSG00000146856-AGBL3 [tissue]
Peptide AtlasQ8NEM8
HPRD14175
IPIIPI00843995   IPI00302490   IPI00303972   IPI00921808   IPI00979206   IPI00973302   IPI00972983   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEM8
IntAct (EBI)Q8NEM8
FunCoupENSG00000146856
BioGRIDAGBL3
STRING (EMBL)AGBL3
ZODIACAGBL3
Ontologies - Pathways
QuickGOQ8NEM8
Ontology : AmiGOmetallocarboxypeptidase activity  cytosol  proteolysis  zinc ion binding  protein side chain deglutamylation  
Ontology : EGO-EBImetallocarboxypeptidase activity  cytosol  proteolysis  zinc ion binding  protein side chain deglutamylation  
NDEx NetworkAGBL3
Atlas of Cancer Signalling NetworkAGBL3
Wikipedia pathwaysAGBL3
Orthology - Evolution
OrthoDB340351
GeneTree (enSembl)ENSG00000146856
Phylogenetic Trees/Animal Genes : TreeFamAGBL3
HOGENOMQ8NEM8
Homologs : HomoloGeneAGBL3
Homology/Alignments : Family Browser (UCSC)AGBL3
Gene fusions - Rearrangements
Fusion : QuiverAGBL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGBL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGBL3
dbVarAGBL3
ClinVarAGBL3
1000_GenomesAGBL3 
Exome Variant ServerAGBL3
GNOMAD BrowserENSG00000146856
Varsome BrowserAGBL3
Genetic variants : HAPMAP340351
Genomic Variants (DGV)AGBL3 [DGVbeta]
DECIPHERAGBL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGBL3 
Mutations
ICGC Data PortalAGBL3 
TCGA Data PortalAGBL3 
Broad Tumor PortalAGBL3
OASIS PortalAGBL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGBL3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAGBL3
Mutations and Diseases : HGMDAGBL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGBL3
DgiDB (Drug Gene Interaction Database)AGBL3
DoCM (Curated mutations)AGBL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGBL3 (select a term)
intoGenAGBL3
Cancer3DAGBL3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617346   
Orphanet
DisGeNETAGBL3
MedgenAGBL3
Genetic Testing Registry AGBL3
NextProtQ8NEM8 [Medical]
TSGene340351
GENETestsAGBL3
Target ValidationAGBL3
Huge Navigator AGBL3 [HugePedia]
snp3D : Map Gene to Disease340351
BioCentury BCIQAGBL3
ClinGenAGBL3
Clinical trials, drugs, therapy
Protein Interactions : CTD340351
Pharm GKB GenePA142672635
Clinical trialAGBL3
Miscellaneous
canSAR (ICR)AGBL3 (select the gene name)
HarmonizomeAGBL3
DataMed IndexAGBL3
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGBL3
EVEXAGBL3
GoPubMedAGBL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:05:19 CEST 2020
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