Atlas of Genetics and Cytogenetics in Oncology and Haematology


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AGBL5-AS1 (AGBL5 antisense RNA 1)

Identity

Alias_namesAGBL5 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) AGBL5-AS1
LocusID (NCBI) 100874031
Atlas_Id 60197
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27049683 and ends at 27050264 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGBL5-AS1   41133
Cards
Entrez_Gene (NCBI)AGBL5-AS1  100874031  AGBL5 antisense RNA 1
Aliases
GeneCards (Weizmann)AGBL5-AS1
Ensembl hg19 (Hinxton)ENSG00000231636 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231636 [Gene_View]  chr2:27049683-27050264 [Contig_View]  AGBL5-AS1 [Vega]
ICGC DataPortalENSG00000231636
TCGA cBioPortalAGBL5-AS1
AceView (NCBI)AGBL5-AS1
Genatlas (Paris)AGBL5-AS1
WikiGenes100874031
SOURCE (Princeton)AGBL5-AS1
Genetics Home Reference (NIH)AGBL5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)AGBL5-AS1  -     chr2:27049683-27050264 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGBL5-AS1  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblAGBL5-AS1 - 2p23.3 [CytoView hg19]  AGBL5-AS1 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIAGBL5-AS1 [Mapview hg19]  AGBL5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI038092
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGBL5-AS1
Cluster EST : UnigeneHs.132725 [ NCBI ]
CGAP (NCI)Hs.132725
Alternative Splicing GalleryENSG00000231636
Gene ExpressionAGBL5-AS1 [ NCBI-GEO ]   AGBL5-AS1 [ EBI - ARRAY_EXPRESS ]   AGBL5-AS1 [ SEEK ]   AGBL5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)AGBL5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874031
GTEX Portal (Tissue expression)AGBL5-AS1
Human Protein AtlasENSG00000231636-AGBL5-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AGBL5-AS1
DMDM Disease mutations100874031
Blocks (Seattle)AGBL5-AS1
Human Protein Atlas [tissue]ENSG00000231636-AGBL5-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000231636
BioGRIDAGBL5-AS1
STRING (EMBL)AGBL5-AS1
ZODIACAGBL5-AS1
Ontologies - Pathways
Huge Navigator AGBL5-AS1 [HugePedia]
snp3D : Map Gene to Disease100874031
BioCentury BCIQAGBL5-AS1
ClinGenAGBL5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874031
Clinical trialAGBL5-AS1
Miscellaneous
canSAR (ICR)AGBL5-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGBL5-AS1
EVEXAGBL5-AS1
GoPubMedAGBL5-AS1
iHOPAGBL5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:37:18 CET 2017

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