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AGBL5 (ATP/GTP binding protein like 5)

Identity

Alias_symbol (synonym)FLJ21839
CCP5
Other aliasRP75
HGNC (Hugo) AGBL5
LocusID (NCBI) 60509
Atlas_Id 60196
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27051623 and ends at 27059535 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AGBL5 (2p23.3) / CHD5 (1p36.31)AGBL5 (2p23.3) / LAMB2P1 (3p21.31)AGBL5 (2p23.3) / PFAS (17p13.1)
S100A10 (1q21.3) / AGBL5 (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGBL5   26147
Cards
Entrez_Gene (NCBI)AGBL5  60509  ATP/GTP binding protein like 5
AliasesCCP5; RP75
GeneCards (Weizmann)AGBL5
Ensembl hg19 (Hinxton)ENSG00000084693 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000084693 [Gene_View]  chr2:27051623-27059535 [Contig_View]  AGBL5 [Vega]
ICGC DataPortalENSG00000084693
TCGA cBioPortalAGBL5
AceView (NCBI)AGBL5
Genatlas (Paris)AGBL5
WikiGenes60509
SOURCE (Princeton)AGBL5
Genetics Home Reference (NIH)AGBL5
Genomic and cartography
GoldenPath hg38 (UCSC)AGBL5  -     chr2:27051623-27059535 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGBL5  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblAGBL5 - 2p23.3 [CytoView hg19]  AGBL5 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIAGBL5 [Mapview hg19]  AGBL5 [Mapview hg38]
OMIM615900   617023   
Gene and transcription
Genbank (Entrez)AI990522 AK023398 AK025492 AK302091 AL833844
RefSeq transcript (Entrez)NM_001035507 NM_021831
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGBL5
Cluster EST : UnigeneHs.138207 [ NCBI ]
CGAP (NCI)Hs.138207
Alternative Splicing GalleryENSG00000084693
Gene ExpressionAGBL5 [ NCBI-GEO ]   AGBL5 [ EBI - ARRAY_EXPRESS ]   AGBL5 [ SEEK ]   AGBL5 [ MEM ]
Gene Expression Viewer (FireBrowse)AGBL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60509
GTEX Portal (Tissue expression)AGBL5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDL9
Splice isoforms : SwissVarQ8NDL9
Catalytic activity : Enzyme3.4.17.- [ Enzyme-Expasy ]   3.4.17.-3.4.17.- [ IntEnz-EBI ]   3.4.17.- [ BRENDA ]   3.4.17.- [ KEGG ]   
PhosPhoSitePlusQ8NDL9
Domains : Interpro (EBI)M14_AGBL5-like    Peptidase_M14   
Domain families : Pfam (Sanger)Peptidase_M14 (PF00246)   
Domain families : Pfam (NCBI)pfam00246   
Conserved Domain (NCBI)AGBL5
DMDM Disease mutations60509
Blocks (Seattle)AGBL5
SuperfamilyQ8NDL9
Human Protein AtlasENSG00000084693
Peptide AtlasQ8NDL9
HPRD07968
IPIIPI00171550   IPI00186972   IPI00480100   IPI00937085   IPI00893659   IPI00894046   IPI00894450   IPI00894348   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDL9
IntAct (EBI)Q8NDL9
FunCoupENSG00000084693
BioGRIDAGBL5
STRING (EMBL)AGBL5
ZODIACAGBL5
Ontologies - Pathways
QuickGOQ8NDL9
Ontology : AmiGOmetallocarboxypeptidase activity  nucleus  nucleus  cytoplasm  cytosol  proteolysis  zinc ion binding  tubulin binding  midbody  protein deglutamylation  protein branching point deglutamylation  defense response to virus  mitotic spindle  
Ontology : EGO-EBImetallocarboxypeptidase activity  nucleus  nucleus  cytoplasm  cytosol  proteolysis  zinc ion binding  tubulin binding  midbody  protein deglutamylation  protein branching point deglutamylation  defense response to virus  mitotic spindle  
NDEx NetworkAGBL5
Atlas of Cancer Signalling NetworkAGBL5
Wikipedia pathwaysAGBL5
Orthology - Evolution
OrthoDB60509
GeneTree (enSembl)ENSG00000084693
Phylogenetic Trees/Animal Genes : TreeFamAGBL5
HOVERGENQ8NDL9
HOGENOMQ8NDL9
Homologs : HomoloGeneAGBL5
Homology/Alignments : Family Browser (UCSC)AGBL5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGBL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGBL5
dbVarAGBL5
ClinVarAGBL5
1000_GenomesAGBL5 
Exome Variant ServerAGBL5
ExAC (Exome Aggregation Consortium)AGBL5 (select the gene name)
Genetic variants : HAPMAP60509
Genomic Variants (DGV)AGBL5 [DGVbeta]
DECIPHERAGBL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGBL5 
Mutations
ICGC Data PortalAGBL5 
TCGA Data PortalAGBL5 
Broad Tumor PortalAGBL5
OASIS PortalAGBL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGBL5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGBL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGBL5
DgiDB (Drug Gene Interaction Database)AGBL5
DoCM (Curated mutations)AGBL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGBL5 (select a term)
intoGenAGBL5
Cancer3DAGBL5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615900    617023   
Orphanet659   
MedgenAGBL5
Genetic Testing Registry AGBL5
NextProtQ8NDL9 [Medical]
TSGene60509
GENETestsAGBL5
Target ValidationAGBL5
Huge Navigator AGBL5 [HugePedia]
snp3D : Map Gene to Disease60509
BioCentury BCIQAGBL5
ClinGenAGBL5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60509
Chemical/Pharm GKB GenePA162375816
Clinical trialAGBL5
Miscellaneous
canSAR (ICR)AGBL5 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGBL5
EVEXAGBL5
GoPubMedAGBL5
iHOPAGBL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:37:43 CEST 2017

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