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AGFG2 (ArfGAP with FG repeats 2)

Identity

Alias_namesHRBL
HIV-1 Rev binding protein-like
Alias_symbol (synonym)RABR
Other alias
HGNC (Hugo) AGFG2
LocusID (NCBI) 3268
Atlas_Id 60198
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100136834 and ends at 100165843 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGFG2   5177
Cards
Entrez_Gene (NCBI)AGFG2  3268  ArfGAP with FG repeats 2
AliasesHRBL; RABR
GeneCards (Weizmann)AGFG2
Ensembl hg19 (Hinxton)ENSG00000106351 [Gene_View]  chr7:100136834-100165843 [Contig_View]  AGFG2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106351 [Gene_View]  chr7:100136834-100165843 [Contig_View]  AGFG2 [Vega]
ICGC DataPortalENSG00000106351
TCGA cBioPortalAGFG2
AceView (NCBI)AGFG2
Genatlas (Paris)AGFG2
WikiGenes3268
SOURCE (Princeton)AGFG2
Genetics Home Reference (NIH)AGFG2
Genomic and cartography
GoldenPath hg19 (UCSC)AGFG2  -     chr7:100136834-100165843 +  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AGFG2  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblAGFG2 - 7q22.1 [CytoView hg19]  AGFG2 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIAGFG2 [Mapview hg19]  AGFG2 [Mapview hg38]
OMIM604019   
Gene and transcription
Genbank (Entrez)AF015042 AK057758 AK090744 AK314954 BC009393
RefSeq transcript (Entrez)NM_006076
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)AGFG2
Cluster EST : UnigeneHs.521083 [ NCBI ]
CGAP (NCI)Hs.521083
Alternative Splicing GalleryENSG00000106351
Gene ExpressionAGFG2 [ NCBI-GEO ]   AGFG2 [ EBI - ARRAY_EXPRESS ]   AGFG2 [ SEEK ]   AGFG2 [ MEM ]
Gene Expression Viewer (FireBrowse)AGFG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3268
GTEX Portal (Tissue expression)AGFG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95081   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95081  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95081
Splice isoforms : SwissVarO95081
PhosPhoSitePlusO95081
Domaine pattern : Prosite (Expaxy)ARFGAP (PS50115)   
Domains : Interpro (EBI)ArfGAP   
Domain families : Pfam (Sanger)ArfGap (PF01412)   
Domain families : Pfam (NCBI)pfam01412   
Domain families : Smart (EMBL)ArfGap (SM00105)  
Conserved Domain (NCBI)AGFG2
DMDM Disease mutations3268
Blocks (Seattle)AGFG2
SuperfamilyO95081
Human Protein AtlasENSG00000106351
Peptide AtlasO95081
HPRD04932
IPIIPI00418238   IPI00418239   IPI00925944   
Protein Interaction databases
DIP (DOE-UCLA)O95081
IntAct (EBI)O95081
FunCoupENSG00000106351
BioGRIDAGFG2
STRING (EMBL)AGFG2
ZODIACAGFG2
Ontologies - Pathways
QuickGOO95081
Ontology : AmiGOmolecular_function  GTPase activator activity  biological_process  membrane  positive regulation of GTPase activity  metal ion binding  
Ontology : EGO-EBImolecular_function  GTPase activator activity  biological_process  membrane  positive regulation of GTPase activity  metal ion binding  
NDEx NetworkAGFG2
Atlas of Cancer Signalling NetworkAGFG2
Wikipedia pathwaysAGFG2
Orthology - Evolution
OrthoDB3268
GeneTree (enSembl)ENSG00000106351
Phylogenetic Trees/Animal Genes : TreeFamAGFG2
HOVERGENO95081
HOGENOMO95081
Homologs : HomoloGeneAGFG2
Homology/Alignments : Family Browser (UCSC)AGFG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGFG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGFG2
dbVarAGFG2
ClinVarAGFG2
1000_GenomesAGFG2 
Exome Variant ServerAGFG2
ExAC (Exome Aggregation Consortium)AGFG2 (select the gene name)
Genetic variants : HAPMAP3268
Genomic Variants (DGV)AGFG2 [DGVbeta]
DECIPHER (Syndromes)7:100136834-100165843  ENSG00000106351
CONAN: Copy Number AnalysisAGFG2 
Mutations
ICGC Data PortalAGFG2 
TCGA Data PortalAGFG2 
Broad Tumor PortalAGFG2
OASIS PortalAGFG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGFG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGFG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGFG2
DgiDB (Drug Gene Interaction Database)AGFG2
DoCM (Curated mutations)AGFG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGFG2 (select a term)
intoGenAGFG2
Cancer3DAGFG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604019   
Orphanet
MedgenAGFG2
Genetic Testing Registry AGFG2
NextProtO95081 [Medical]
TSGene3268
GENETestsAGFG2
Huge Navigator AGFG2 [HugePedia]
snp3D : Map Gene to Disease3268
BioCentury BCIQAGFG2
ClinGenAGFG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3268
Chemical/Pharm GKB GenePA29451
Clinical trialAGFG2
Miscellaneous
canSAR (ICR)AGFG2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGFG2
EVEXAGFG2
GoPubMedAGFG2
iHOPAGFG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:56 CET 2017

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