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AGGF1 (angiogenic factor with G-patch and FHA domains 1)

Identity

Alias (NCBI)GPATC7
GPATCH7
HSU84971
HUS84971
VG5Q
HGNC (Hugo) AGGF1
HGNC Alias symbVG5Q
HSU84971
FLJ10283
GPATC7
GPATCH7
LocusID (NCBI) 55109
Atlas_Id 55701
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 77030404 and ends at 77065233 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGGF1 (5q13.3)::RAF1 (3p25.2)FBXO32 (8q24.13)::AGGF1 (5q13.3)NUP214 (9q34.13)::AGGF1 (5q13.3)
RAF1 (3p25.2)::AGGF1 (5q13.3)RIC8A (11p15.5)::AGGF1 (5q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Klippel Trenaunay syndrome


External links

 

Nomenclature
HGNC (Hugo)AGGF1   24684
Cards
Entrez_Gene (NCBI)AGGF1    angiogenic factor with G-patch and FHA domains 1
AliasesGPATC7; GPATCH7; HSU84971; HUS84971; 
VG5Q
GeneCards (Weizmann)AGGF1
Ensembl hg19 (Hinxton)ENSG00000164252 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164252 [Gene_View]  ENSG00000164252 [Sequence]  chr5:77030404-77065233 [Contig_View]  AGGF1 [Vega]
ICGC DataPortalENSG00000164252
TCGA cBioPortalAGGF1
AceView (NCBI)AGGF1
Genatlas (Paris)AGGF1
SOURCE (Princeton)AGGF1
Genetics Home Reference (NIH)AGGF1
Genomic and cartography
GoldenPath hg38 (UCSC)AGGF1  -     chr5:77030404-77065233 +  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGGF1  -     5q13.3   [Description]    (hg19-Feb_2009)
GoldenPathAGGF1 - 5q13.3 [CytoView hg19]  AGGF1 - 5q13.3 [CytoView hg38]
ImmunoBaseENSG00000164252
Genome Data Viewer NCBIAGGF1 [Mapview hg19]  
OMIM608464   
Gene and transcription
Genbank (Entrez)AI453097 AK001145 AK097255 AK289394 AW500409
RefSeq transcript (Entrez)NM_018046
Consensus coding sequences : CCDS (NCBI)AGGF1
Gene ExpressionAGGF1 [ NCBI-GEO ]   AGGF1 [ EBI - ARRAY_EXPRESS ]   AGGF1 [ SEEK ]   AGGF1 [ MEM ]
Gene Expression Viewer (FireBrowse)AGGF1 [ Firebrowse - Broad ]
GenevisibleExpression of AGGF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55109
GTEX Portal (Tissue expression)AGGF1
Human Protein AtlasENSG00000164252-AGGF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N302   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N302  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N302
PhosPhoSitePlusQ8N302
Domaine pattern : Prosite (Expaxy)FHA_DOMAIN (PS50006)    G_PATCH (PS50174)   
Domains : Interpro (EBI)AGGF1_OCRE    FHA_dom    G_patch_dom    OCRE    SMAD_FHA_dom_sf   
Domain families : Pfam (Sanger)FHA (PF00498)    G-patch (PF01585)    OCRE (PF17780)   
Domain families : Pfam (NCBI)pfam00498    pfam01585    pfam17780   
Domain families : Smart (EMBL)FHA (SM00240)  G_patch (SM00443)  
Conserved Domain (NCBI)AGGF1
SuperfamilyQ8N302
AlphaFold pdb e-kbQ8N302   
Human Protein Atlas [tissue]ENSG00000164252-AGGF1 [tissue]
HPRD07621
Protein Interaction databases
DIP (DOE-UCLA)Q8N302
IntAct (EBI)Q8N302
BioGRIDAGGF1
STRING (EMBL)AGGF1
ZODIACAGGF1
Ontologies - Pathways
QuickGOQ8N302
Ontology : AmiGOangiogenesis  vasculogenesis  positive regulation of endothelial cell proliferation  nucleic acid binding  protein binding  extracellular region  cytoplasm  cell adhesion  positive regulation of angiogenesis  positive regulation of angiogenesis  perinuclear region of cytoplasm  
Ontology : EGO-EBIangiogenesis  vasculogenesis  positive regulation of endothelial cell proliferation  nucleic acid binding  protein binding  extracellular region  cytoplasm  cell adhesion  positive regulation of angiogenesis  positive regulation of angiogenesis  perinuclear region of cytoplasm  
NDEx NetworkAGGF1
Atlas of Cancer Signalling NetworkAGGF1
Wikipedia pathwaysAGGF1
Orthology - Evolution
OrthoDB55109
GeneTree (enSembl)ENSG00000164252
Phylogenetic Trees/Animal Genes : TreeFamAGGF1
Homologs : HomoloGeneAGGF1
Homology/Alignments : Family Browser (UCSC)AGGF1
Gene fusions - Rearrangements
Fusion : QuiverAGGF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGGF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGGF1
dbVarAGGF1
ClinVarAGGF1
MonarchAGGF1
1000_GenomesAGGF1 
Exome Variant ServerAGGF1
GNOMAD BrowserENSG00000164252
Varsome BrowserAGGF1
ACMGAGGF1 variants
VarityQ8N302
Genomic Variants (DGV)AGGF1 [DGVbeta]
DECIPHERAGGF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGGF1 
Mutations
ICGC Data PortalAGGF1 
TCGA Data PortalAGGF1 
Broad Tumor PortalAGGF1
OASIS PortalAGGF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGGF1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAGGF1
Mutations and Diseases : HGMDAGGF1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaAGGF1
DgiDB (Drug Gene Interaction Database)AGGF1
DoCM (Curated mutations)AGGF1
CIViC (Clinical Interpretations of Variants in Cancer)AGGF1
Cancer3DAGGF1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608464   
Orphanet12005   
DisGeNETAGGF1
MedgenAGGF1
Genetic Testing Registry AGGF1
NextProtQ8N302 [Medical]
GENETestsAGGF1
Target ValidationAGGF1
Huge Navigator AGGF1 [HugePedia]
ClinGenAGGF1
Clinical trials, drugs, therapy
MyCancerGenomeAGGF1
Protein Interactions : CTDAGGF1
Pharm GKB GenePA134951291
PharosQ8N302
Clinical trialAGGF1
Miscellaneous
canSAR (ICR)AGGF1
HarmonizomeAGGF1
ARCHS4AGGF1
DataMed IndexAGGF1
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAGGF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jan 17 15:13:57 CET 2022

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