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AGGF1 (angiogenic factor with G-patch and FHA domains 1)

Identity

Alias_symbol (synonym)VG5Q
HSU84971
FLJ10283
GPATC7
GPATCH7
Other aliasHUS84971
HGNC (Hugo) AGGF1
LocusID (NCBI) 55109
Atlas_Id 55701
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 77030385 and ends at 77065233 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AGGF1 (5q13.3) / RAF1 (3p25.2)FBXO32 (8q24.13) / AGGF1 (5q13.3)NUP214 (9q34.13) / AGGF1 (5q13.3)
RAF1 (3p25.2) / AGGF1 (5q13.3)RIC8A (11p15.5) / AGGF1 (5q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Klippel Trenaunay syndrome


External links

Nomenclature
HGNC (Hugo)AGGF1   24684
Cards
Entrez_Gene (NCBI)AGGF1  55109  angiogenic factor with G-patch and FHA domains 1
AliasesGPATC7; GPATCH7; HSU84971; HUS84971; 
VG5Q
GeneCards (Weizmann)AGGF1
Ensembl hg19 (Hinxton)ENSG00000164252 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164252 [Gene_View]  chr5:77030385-77065233 [Contig_View]  AGGF1 [Vega]
ICGC DataPortalENSG00000164252
TCGA cBioPortalAGGF1
AceView (NCBI)AGGF1
Genatlas (Paris)AGGF1
WikiGenes55109
SOURCE (Princeton)AGGF1
Genetics Home Reference (NIH)AGGF1
Genomic and cartography
GoldenPath hg38 (UCSC)AGGF1  -     chr5:77030385-77065233 +  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGGF1  -     5q13.3   [Description]    (hg19-Feb_2009)
EnsemblAGGF1 - 5q13.3 [CytoView hg19]  AGGF1 - 5q13.3 [CytoView hg38]
Mapping of homologs : NCBIAGGF1 [Mapview hg19]  AGGF1 [Mapview hg38]
OMIM608464   
Gene and transcription
Genbank (Entrez)AI453097 AK001145 AK097255 AK289394 AW500409
RefSeq transcript (Entrez)NM_018046
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGGF1
Cluster EST : UnigeneHs.634849 [ NCBI ]
CGAP (NCI)Hs.634849
Alternative Splicing GalleryENSG00000164252
Gene ExpressionAGGF1 [ NCBI-GEO ]   AGGF1 [ EBI - ARRAY_EXPRESS ]   AGGF1 [ SEEK ]   AGGF1 [ MEM ]
Gene Expression Viewer (FireBrowse)AGGF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55109
GTEX Portal (Tissue expression)AGGF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N302   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N302  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N302
Splice isoforms : SwissVarQ8N302
PhosPhoSitePlusQ8N302
Domaine pattern : Prosite (Expaxy)FHA_DOMAIN (PS50006)    G_PATCH (PS50174)   
Domains : Interpro (EBI)FHA_dom    G_patch_dom    SMAD_FHA_domain   
Domain families : Pfam (Sanger)FHA (PF00498)    G-patch (PF01585)   
Domain families : Pfam (NCBI)pfam00498    pfam01585   
Domain families : Smart (EMBL)FHA (SM00240)  G_patch (SM00443)  
Conserved Domain (NCBI)AGGF1
DMDM Disease mutations55109
Blocks (Seattle)AGGF1
SuperfamilyQ8N302
Human Protein AtlasENSG00000164252
Peptide AtlasQ8N302
HPRD07621
IPIIPI00018027   IPI00106911   IPI00164579   IPI00965127   
Protein Interaction databases
DIP (DOE-UCLA)Q8N302
IntAct (EBI)Q8N302
FunCoupENSG00000164252
BioGRIDAGGF1
STRING (EMBL)AGGF1
ZODIACAGGF1
Ontologies - Pathways
QuickGOQ8N302
Ontology : AmiGOangiogenesis  vasculogenesis  positive regulation of endothelial cell proliferation  nucleic acid binding  protein binding  extracellular region  cytoplasm  cell adhesion  positive regulation of angiogenesis  perinuclear region of cytoplasm  
Ontology : EGO-EBIangiogenesis  vasculogenesis  positive regulation of endothelial cell proliferation  nucleic acid binding  protein binding  extracellular region  cytoplasm  cell adhesion  positive regulation of angiogenesis  perinuclear region of cytoplasm  
NDEx NetworkAGGF1
Atlas of Cancer Signalling NetworkAGGF1
Wikipedia pathwaysAGGF1
Orthology - Evolution
OrthoDB55109
GeneTree (enSembl)ENSG00000164252
Phylogenetic Trees/Animal Genes : TreeFamAGGF1
HOVERGENQ8N302
HOGENOMQ8N302
Homologs : HomoloGeneAGGF1
Homology/Alignments : Family Browser (UCSC)AGGF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGGF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGGF1
dbVarAGGF1
ClinVarAGGF1
1000_GenomesAGGF1 
Exome Variant ServerAGGF1
ExAC (Exome Aggregation Consortium)AGGF1 (select the gene name)
Genetic variants : HAPMAP55109
Genomic Variants (DGV)AGGF1 [DGVbeta]
DECIPHERAGGF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGGF1 
Mutations
ICGC Data PortalAGGF1 
TCGA Data PortalAGGF1 
Broad Tumor PortalAGGF1
OASIS PortalAGGF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGGF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGGF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGGF1
DgiDB (Drug Gene Interaction Database)AGGF1
DoCM (Curated mutations)AGGF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGGF1 (select a term)
intoGenAGGF1
Cancer3DAGGF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608464   
Orphanet12005   
MedgenAGGF1
Genetic Testing Registry AGGF1
NextProtQ8N302 [Medical]
TSGene55109
GENETestsAGGF1
Huge Navigator AGGF1 [HugePedia]
snp3D : Map Gene to Disease55109
BioCentury BCIQAGGF1
ClinGenAGGF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55109
Chemical/Pharm GKB GenePA134951291
Clinical trialAGGF1
Miscellaneous
canSAR (ICR)AGGF1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGGF1
EVEXAGGF1
GoPubMedAGGF1
iHOPAGGF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:05:21 CEST 2017

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