Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AGMAT (agmatinase)

Identity

Alias_namesagmatine ureohydrolase (agmatinase)
Alias_symbol (synonym)FLJ23384
Other alias-
HGNC (Hugo) AGMAT
LocusID (NCBI) 79814
Atlas_Id 53087
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 15571699 and ends at 15585110 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGMAT   18407
Cards
Entrez_Gene (NCBI)AGMAT  79814  agmatinase
Aliases
GeneCards (Weizmann)AGMAT
Ensembl hg19 (Hinxton)ENSG00000116771 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116771 [Gene_View]  chr1:15571699-15585110 [Contig_View]  AGMAT [Vega]
ICGC DataPortalENSG00000116771
TCGA cBioPortalAGMAT
AceView (NCBI)AGMAT
Genatlas (Paris)AGMAT
WikiGenes79814
SOURCE (Princeton)AGMAT
Genetics Home Reference (NIH)AGMAT
Genomic and cartography
GoldenPath hg38 (UCSC)AGMAT  -     chr1:15571699-15585110 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGMAT  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblAGMAT - 1p36.21 [CytoView hg19]  AGMAT - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIAGMAT [Mapview hg19]  AGMAT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130034 AK225366 AY057097 BC005090 BM788254
RefSeq transcript (Entrez)NM_024758
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGMAT
Cluster EST : UnigeneHs.461532 [ NCBI ]
CGAP (NCI)Hs.461532
Alternative Splicing GalleryENSG00000116771
Gene ExpressionAGMAT [ NCBI-GEO ]   AGMAT [ EBI - ARRAY_EXPRESS ]   AGMAT [ SEEK ]   AGMAT [ MEM ]
Gene Expression Viewer (FireBrowse)AGMAT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79814
GTEX Portal (Tissue expression)AGMAT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSE5
Splice isoforms : SwissVarQ9BSE5
PhosPhoSitePlusQ9BSE5
Domaine pattern : Prosite (Expaxy)ARGINASE_1 (PS01053)    ARGINASE_2 (PS51409)   
Domains : Interpro (EBI)Agmatinase-rel    Ureohydrolase    Ureohydrolase_domain    Ureohydrolase_Mn_BS   
Domain families : Pfam (Sanger)Arginase (PF00491)   
Domain families : Pfam (NCBI)pfam00491   
Conserved Domain (NCBI)AGMAT
DMDM Disease mutations79814
Blocks (Seattle)AGMAT
SuperfamilyQ9BSE5
Human Protein AtlasENSG00000116771
Peptide AtlasQ9BSE5
HPRD12436
IPIIPI00305360   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSE5
IntAct (EBI)Q9BSE5
FunCoupENSG00000116771
BioGRIDAGMAT
STRING (EMBL)AGMAT
ZODIACAGMAT
Ontologies - Pathways
QuickGOQ9BSE5
Ontology : AmiGOmitochondrion  spermidine biosynthetic process  agmatinase activity  putrescine biosynthetic process from arginine  metal ion binding  extracellular exosome  agmatine biosynthetic process  
Ontology : EGO-EBImitochondrion  spermidine biosynthetic process  agmatinase activity  putrescine biosynthetic process from arginine  metal ion binding  extracellular exosome  agmatine biosynthetic process  
Pathways : KEGGArginine and proline metabolism   
NDEx NetworkAGMAT
Atlas of Cancer Signalling NetworkAGMAT
Wikipedia pathwaysAGMAT
Orthology - Evolution
OrthoDB79814
GeneTree (enSembl)ENSG00000116771
Phylogenetic Trees/Animal Genes : TreeFamAGMAT
HOVERGENQ9BSE5
HOGENOMQ9BSE5
Homologs : HomoloGeneAGMAT
Homology/Alignments : Family Browser (UCSC)AGMAT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGMAT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGMAT
dbVarAGMAT
ClinVarAGMAT
1000_GenomesAGMAT 
Exome Variant ServerAGMAT
ExAC (Exome Aggregation Consortium)AGMAT (select the gene name)
Genetic variants : HAPMAP79814
Genomic Variants (DGV)AGMAT [DGVbeta]
DECIPHERAGMAT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGMAT 
Mutations
ICGC Data PortalAGMAT 
TCGA Data PortalAGMAT 
Broad Tumor PortalAGMAT
OASIS PortalAGMAT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGMAT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGMAT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch AGMAT
DgiDB (Drug Gene Interaction Database)AGMAT
DoCM (Curated mutations)AGMAT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGMAT (select a term)
intoGenAGMAT
Cancer3DAGMAT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAGMAT
Genetic Testing Registry AGMAT
NextProtQ9BSE5 [Medical]
TSGene79814
GENETestsAGMAT
Target ValidationAGMAT
Huge Navigator AGMAT [HugePedia]
snp3D : Map Gene to Disease79814
BioCentury BCIQAGMAT
ClinGenAGMAT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79814
Chemical/Pharm GKB GenePA24619
Clinical trialAGMAT
Miscellaneous
canSAR (ICR)AGMAT (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGMAT
EVEXAGMAT
GoPubMedAGMAT
iHOPAGMAT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:54:36 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.