Atlas of Genetics and Cytogenetics in Oncology and Haematology

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AGMO (alkylglycerol monooxygenase)

Identity

Alias (NCBI)TMEM195
HGNC (Hugo) AGMO
HGNC Alias symbFLJ16237
HGNC Previous nameTMEM195
HGNC Previous nametransmembrane protein 195
LocusID (NCBI) 392636
Atlas_Id 60201
Location 7p21.2  [Link to chromosome band 7p21]
Location_base_pair Starts at 15200318 and ends at 15562015 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(7;13)(p21;q14) RB1/AGMO
t(7;13)(p21;q14) RB1/AGMO

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(7;7)(p14;p21) AGMO/POU6F2

External links

Nomenclature
HGNC (Hugo)AGMO   33784
Cards
Entrez_Gene (NCBI)AGMO    alkylglycerol monooxygenase
AliasesTMEM195
GeneCards (Weizmann)AGMO
Ensembl hg19 (Hinxton)ENSG00000187546 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187546 [Gene_View]  ENSG00000187546 [Sequence]  chr7:15200318-15562015 [Contig_View]  AGMO [Vega]
ICGC DataPortalENSG00000187546
TCGA cBioPortalAGMO
AceView (NCBI)AGMO
Genatlas (Paris)AGMO
SOURCE (Princeton)AGMO
Genetics Home Reference (NIH)AGMO
Genomic and cartography
GoldenPath hg38 (UCSC)AGMO  -     chr7:15200318-15562015 -  7p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGMO  -     7p21.2   [Description]    (hg19-Feb_2009)
GoldenPathAGMO - 7p21.2 [CytoView hg19]  AGMO - 7p21.2 [CytoView hg38]
ImmunoBaseENSG00000187546
genome Data Viewer NCBIAGMO [Mapview hg19]  
OMIM613738   
Gene and transcription
Genbank (Entrez)AK131284 BC108676 KJ534765
RefSeq transcript (Entrez)NM_001004320
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGMO
Alternative Splicing GalleryENSG00000187546
Gene ExpressionAGMO [ NCBI-GEO ]   AGMO [ EBI - ARRAY_EXPRESS ]   AGMO [ SEEK ]   AGMO [ MEM ]
Gene Expression Viewer (FireBrowse)AGMO [ Firebrowse - Broad ]
GenevisibleExpression of AGMO in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392636
GTEX Portal (Tissue expression)AGMO
Human Protein AtlasENSG00000187546-AGMO [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNB7
Splice isoforms : SwissVarQ6ZNB7
PhosPhoSitePlusQ6ZNB7
Domains : Interpro (EBI)Fatty_acid_hydroxylase   
Domain families : Pfam (Sanger)FA_hydroxylase (PF04116)   
Domain families : Pfam (NCBI)pfam04116   
Conserved Domain (NCBI)AGMO
Blocks (Seattle)AGMO
SuperfamilyQ6ZNB7
Human Protein Atlas [tissue]ENSG00000187546-AGMO [tissue]
Peptide AtlasQ6ZNB7
HPRD13362
IPIIPI00418595   IPI00844341   IPI00893296   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNB7
IntAct (EBI)Q6ZNB7
BioGRIDAGMO
STRING (EMBL)AGMO
ZODIACAGMO
Ontologies - Pathways
QuickGOQ6ZNB7
Ontology : AmiGOiron ion binding  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  membrane lipid metabolic process  membrane lipid metabolic process  integral component of membrane  triglyceride biosynthetic process  ether lipid metabolic process  glyceryl-ether monooxygenase activity  glyceryl-ether monooxygenase activity  glyceryl-ether monooxygenase activity  oxidation-reduction process  
Ontology : EGO-EBIiron ion binding  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  membrane lipid metabolic process  membrane lipid metabolic process  integral component of membrane  triglyceride biosynthetic process  ether lipid metabolic process  glyceryl-ether monooxygenase activity  glyceryl-ether monooxygenase activity  glyceryl-ether monooxygenase activity  oxidation-reduction process  
NDEx NetworkAGMO
Atlas of Cancer Signalling NetworkAGMO
Wikipedia pathwaysAGMO
Orthology - Evolution
OrthoDB392636
GeneTree (enSembl)ENSG00000187546
Phylogenetic Trees/Animal Genes : TreeFamAGMO
HOGENOMQ6ZNB7
Homologs : HomoloGeneAGMO
Homology/Alignments : Family Browser (UCSC)AGMO
Gene fusions - Rearrangements
Fusion : QuiverAGMO
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGMO [hg38]
dbVarAGMO
ClinVarAGMO
MonarchAGMO
1000_GenomesAGMO 
Exome Variant ServerAGMO
GNOMAD BrowserENSG00000187546
Varsome BrowserAGMO
Genomic Variants (DGV)AGMO [DGVbeta]
DECIPHERAGMO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGMO 
Mutations
ICGC Data PortalAGMO 
TCGA Data PortalAGMO 
Broad Tumor PortalAGMO
OASIS PortalAGMO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGMO  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAGMO
Mutations and Diseases : HGMDAGMO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGMO
DgiDB (Drug Gene Interaction Database)AGMO
DoCM (Curated mutations)AGMO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGMO (select a term)
intoGenAGMO
Cancer3DAGMO(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613738   
Orphanet
DisGeNETAGMO
MedgenAGMO
Genetic Testing Registry AGMO
NextProtQ6ZNB7 [Medical]
GENETestsAGMO
Target ValidationAGMO
Huge Navigator AGMO [HugePedia]
ClinGenAGMO
Clinical trials, drugs, therapy
MyCancerGenomeAGMO
Protein Interactions : CTD
Pharm GKB GenePA162406334
Clinical trialAGMO
Miscellaneous
canSAR (ICR)AGMO (select the gene name)
HarmonizomeAGMO
DataMed IndexAGMO
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGMO
EVEXAGMO
GoPubMedAGMO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:45:23 CET 2020
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