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AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3)

Identity

Alias (NCBI)1-AGPAT 3
LPAAT-GAMMA1
LPAAT3
HGNC (Hugo) AGPAT3
HGNC Alias symbLPAAT-gamma
LocusID (NCBI) 56894
Atlas_Id 60204
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 43865223 and ends at 43987590 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGPAT3 (21q22.3) / ATP1A4 (1q23.2)AGPAT3 (21q22.3) / KSR1 (17q11.1)AGPAT3 (21q22.3) / PDXK (21q22.3)
LAMA5 (20q13.33) / AGPAT3 (21q22.3)TMOD1 (9q22.33) / AGPAT3 (21q22.3)AGPAT3 PDXK
AGPAT3 KSR1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)AGPAT3   326
Cards
Entrez_Gene (NCBI)AGPAT3    1-acylglycerol-3-phosphate O-acyltransferase 3
Aliases1-AGPAT; LPAAT-GAMMA1; LPAAT3
GeneCards (Weizmann)AGPAT3
Ensembl hg19 (Hinxton)ENSG00000160216 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160216 [Gene_View]  ENSG00000160216 [Sequence]  chr21:43865223-43987590 [Contig_View]  AGPAT3 [Vega]
ICGC DataPortalENSG00000160216
TCGA cBioPortalAGPAT3
AceView (NCBI)AGPAT3
Genatlas (Paris)AGPAT3
SOURCE (Princeton)AGPAT3
Genetics Home Reference (NIH)AGPAT3
Genomic and cartography
GoldenPath hg38 (UCSC)AGPAT3  -     chr21:43865223-43987590 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGPAT3  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathAGPAT3 - 21q22.3 [CytoView hg19]  AGPAT3 - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000160216
Genome Data Viewer NCBIAGPAT3 [Mapview hg19]  
OMIM614794   
Gene and transcription
Genbank (Entrez)AB040138 AF156774 AF156775 AK026135 AK074300
RefSeq transcript (Entrez)NM_001037553 NM_001369878 NM_001369880 NM_001369881 NM_020132
Consensus coding sequences : CCDS (NCBI)AGPAT3
Gene ExpressionAGPAT3 [ NCBI-GEO ]   AGPAT3 [ EBI - ARRAY_EXPRESS ]   AGPAT3 [ SEEK ]   AGPAT3 [ MEM ]
Gene Expression Viewer (FireBrowse)AGPAT3 [ Firebrowse - Broad ]
GenevisibleExpression of AGPAT3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56894
GTEX Portal (Tissue expression)AGPAT3
Human Protein AtlasENSG00000160216-AGPAT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRZ7
PhosPhoSitePlusQ9NRZ7
Domains : Interpro (EBI)Acyltransf_C    Plipid/glycerol_acylTrfase   
Domain families : Pfam (Sanger)Acyltransf_C (PF16076)    Acyltransferase (PF01553)   
Domain families : Pfam (NCBI)pfam16076    pfam01553   
Domain families : Smart (EMBL)PlsC (SM00563)  
Conserved Domain (NCBI)AGPAT3
SuperfamilyQ9NRZ7
AlphaFold pdb e-kbQ9NRZ7   
Human Protein Atlas [tissue]ENSG00000160216-AGPAT3 [tissue]
HPRD10637
Protein Interaction databases
DIP (DOE-UCLA)Q9NRZ7
IntAct (EBI)Q9NRZ7
BioGRIDAGPAT3
STRING (EMBL)AGPAT3
ZODIACAGPAT3
Ontologies - Pathways
QuickGOQ9NRZ7
Ontology : AmiGOGolgi membrane  1-acylglycerol-3-phosphate O-acyltransferase activity  1-acylglycerol-3-phosphate O-acyltransferase activity  1-acylglycerol-3-phosphate O-acyltransferase activity  protein binding  nuclear envelope  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  plasma membrane  phosphatidic acid biosynthetic process  phospholipid biosynthetic process  endomembrane system  membrane  integral component of membrane  CDP-diacylglycerol biosynthetic process  acyltransferase activity  
Ontology : EGO-EBIGolgi membrane  1-acylglycerol-3-phosphate O-acyltransferase activity  1-acylglycerol-3-phosphate O-acyltransferase activity  1-acylglycerol-3-phosphate O-acyltransferase activity  protein binding  nuclear envelope  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  plasma membrane  phosphatidic acid biosynthetic process  phospholipid biosynthetic process  endomembrane system  membrane  integral component of membrane  CDP-diacylglycerol biosynthetic process  acyltransferase activity  
Pathways : KEGGGlycerolipid metabolism    Glycerophospholipid metabolism   
NDEx NetworkAGPAT3
Atlas of Cancer Signalling NetworkAGPAT3
Wikipedia pathwaysAGPAT3
Orthology - Evolution
OrthoDB56894
GeneTree (enSembl)ENSG00000160216
Phylogenetic Trees/Animal Genes : TreeFamAGPAT3
Homologs : HomoloGeneAGPAT3
Homology/Alignments : Family Browser (UCSC)AGPAT3
Gene fusions - Rearrangements
Fusion : QuiverAGPAT3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGPAT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGPAT3
dbVarAGPAT3
ClinVarAGPAT3
MonarchAGPAT3
1000_GenomesAGPAT3 
Exome Variant ServerAGPAT3
GNOMAD BrowserENSG00000160216
Varsome BrowserAGPAT3
ACMGAGPAT3 variants
VarityQ9NRZ7
Genomic Variants (DGV)AGPAT3 [DGVbeta]
DECIPHERAGPAT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGPAT3 
Mutations
ICGC Data PortalAGPAT3 
TCGA Data PortalAGPAT3 
Broad Tumor PortalAGPAT3
OASIS PortalAGPAT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGPAT3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAGPAT3
Mutations and Diseases : HGMDAGPAT3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaAGPAT3
DgiDB (Drug Gene Interaction Database)AGPAT3
DoCM (Curated mutations)AGPAT3
CIViC (Clinical Interpretations of Variants in Cancer)AGPAT3
Cancer3DAGPAT3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614794   
Orphanet
DisGeNETAGPAT3
MedgenAGPAT3
Genetic Testing Registry AGPAT3
NextProtQ9NRZ7 [Medical]
GENETestsAGPAT3
Target ValidationAGPAT3
Huge Navigator AGPAT3 [HugePedia]
ClinGenAGPAT3
Clinical trials, drugs, therapy
MyCancerGenomeAGPAT3
Protein Interactions : CTDAGPAT3
Pharm GKB GenePA24623
PharosQ9NRZ7
Clinical trialAGPAT3
Miscellaneous
canSAR (ICR)AGPAT3
HarmonizomeAGPAT3
DataMed IndexAGPAT3
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAGPAT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:41:44 CEST 2021

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