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AGPAT4-IT1 (AGPAT4 intronic transcript 1)

Identity

Alias_namesC6orf59
NCRNA00241
chromosome 6 open reading frame 59
non-protein coding RNA 241
AGPAT4 intronic transcript 1 (non-protein coding)
Alias_symbol (synonym)FLJ23112
Other alias
HGNC (Hugo) AGPAT4-IT1
LocusID (NCBI) 79992
Atlas_Id 60206
Location 6q26  [Link to chromosome band 6q26]
Location_base_pair Starts at 161581167 and ends at 161583014 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGPAT4-IT1   20988
Cards
Entrez_Gene (NCBI)AGPAT4-IT1  79992  AGPAT4 intronic transcript 1
AliasesC6orf59; NCRNA00241
GeneCards (Weizmann)AGPAT4-IT1
Ensembl hg19 (Hinxton) [Gene_View]  chr6:161581167-161583014 [Contig_View]  AGPAT4-IT1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:161581167-161583014 [Contig_View]  AGPAT4-IT1 [Vega]
TCGA cBioPortalAGPAT4-IT1
AceView (NCBI)AGPAT4-IT1
Genatlas (Paris)AGPAT4-IT1
WikiGenes79992
SOURCE (Princeton)AGPAT4-IT1
Genetics Home Reference (NIH)AGPAT4-IT1
Genomic and cartography
GoldenPath hg19 (UCSC)AGPAT4-IT1  -     chr6:161581167-161583014 -  6q26   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AGPAT4-IT1  -     6q26   [Description]    (hg38-Dec_2013)
EnsemblAGPAT4-IT1 - 6q26 [CytoView hg19]  AGPAT4-IT1 - 6q26 [CytoView hg38]
Mapping of homologs : NCBIAGPAT4-IT1 [Mapview hg19]  AGPAT4-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026765 AL136708 BC101668 BC112291
RefSeq transcript (Entrez)NM_024929
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_025741 NW_004929328
Consensus coding sequences : CCDS (NCBI)AGPAT4-IT1
Cluster EST : UnigeneHs.664873 [ NCBI ]
CGAP (NCI)Hs.664873
Gene ExpressionAGPAT4-IT1 [ NCBI-GEO ]   AGPAT4-IT1 [ EBI - ARRAY_EXPRESS ]   AGPAT4-IT1 [ SEEK ]   AGPAT4-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)AGPAT4-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79992
GTEX Portal (Tissue expression)AGPAT4-IT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0P7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0P7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0P7
Splice isoforms : SwissVarQ9H0P7
PhosPhoSitePlusQ9H0P7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AGPAT4-IT1
DMDM Disease mutations79992
Blocks (Seattle)AGPAT4-IT1
SuperfamilyQ9H0P7
Peptide AtlasQ9H0P7
HPRD12889
IPIIPI00156356   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0P7
IntAct (EBI)Q9H0P7
BioGRIDAGPAT4-IT1
STRING (EMBL)AGPAT4-IT1
ZODIACAGPAT4-IT1
Ontologies - Pathways
QuickGOQ9H0P7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkAGPAT4-IT1
Atlas of Cancer Signalling NetworkAGPAT4-IT1
Wikipedia pathwaysAGPAT4-IT1
Orthology - Evolution
OrthoDB79992
Phylogenetic Trees/Animal Genes : TreeFamAGPAT4-IT1
HOVERGENQ9H0P7
HOGENOMQ9H0P7
Homologs : HomoloGeneAGPAT4-IT1
Homology/Alignments : Family Browser (UCSC)AGPAT4-IT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGPAT4-IT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGPAT4-IT1
dbVarAGPAT4-IT1
ClinVarAGPAT4-IT1
1000_GenomesAGPAT4-IT1 
Exome Variant ServerAGPAT4-IT1
ExAC (Exome Aggregation Consortium)AGPAT4-IT1 (select the gene name)
Genetic variants : HAPMAP79992
Genomic Variants (DGV)AGPAT4-IT1 [DGVbeta]
DECIPHER (Syndromes)6:161581167-161583014  
CONAN: Copy Number AnalysisAGPAT4-IT1 
Mutations
ICGC Data PortalAGPAT4-IT1 
TCGA Data PortalAGPAT4-IT1 
Broad Tumor PortalAGPAT4-IT1
OASIS PortalAGPAT4-IT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAGPAT4-IT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGPAT4-IT1
DgiDB (Drug Gene Interaction Database)AGPAT4-IT1
DoCM (Curated mutations)AGPAT4-IT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGPAT4-IT1 (select a term)
intoGenAGPAT4-IT1
Cancer3DAGPAT4-IT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAGPAT4-IT1
Genetic Testing Registry AGPAT4-IT1
NextProtQ9H0P7 [Medical]
TSGene79992
GENETestsAGPAT4-IT1
Huge Navigator AGPAT4-IT1 [HugePedia]
snp3D : Map Gene to Disease79992
BioCentury BCIQAGPAT4-IT1
ClinGenAGPAT4-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79992
Chemical/Pharm GKB GenePA165618159
Clinical trialAGPAT4-IT1
Miscellaneous
canSAR (ICR)AGPAT4-IT1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGPAT4-IT1
EVEXAGPAT4-IT1
GoPubMedAGPAT4-IT1
iHOPAGPAT4-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:57 CET 2017

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