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AGPAT6 (1-acylglycerol-3-phosphate O-acyltransferase 6)

Identity

Other alias1-AGPAT 6
LPAAT-zeta
LPAATZ
TSARG7
HGNC (Hugo) AGPAT6
LocusID (NCBI) 137964
Atlas_Id 60207
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 41435707 and ends at 41482520 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGPAT6   20880
Cards
Entrez_Gene (NCBI)AGPAT6  137964  1-acylglycerol-3-phosphate O-acyltransferase 6
Aliases1-AGPAT; LPAAT-zeta; LPAATZ; TSARG7
GeneCards (Weizmann)AGPAT6
Ensembl hg19 (Hinxton)ENSG00000158669 [Gene_View]  chr8:41435707-41482520 [Contig_View]  AGPAT6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000158669 [Gene_View]  chr8:41435707-41482520 [Contig_View]  AGPAT6 [Vega]
ICGC DataPortalENSG00000158669
TCGA cBioPortalAGPAT6
AceView (NCBI)AGPAT6
Genatlas (Paris)AGPAT6
WikiGenes137964
SOURCE (Princeton)AGPAT6
Genetics Home Reference (NIH)AGPAT6
Genomic and cartography
GoldenPath hg19 (UCSC)AGPAT6  -     chr8:41435707-41482520 +  8p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AGPAT6  -     8p11.21   [Description]    (hg38-Dec_2013)
EnsemblAGPAT6 - 8p11.21 [CytoView hg19]  AGPAT6 - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBIAGPAT6 [Mapview hg19]  AGPAT6 [Mapview hg38]
OMIM608143   
Gene and transcription
Genbank (Entrez)AF317516 AF406612 AL834255 AY358670 AY513610
RefSeq transcript (Entrez)NM_178819
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)AGPAT6
Cluster EST : UnigeneHs.355753 [ NCBI ]
CGAP (NCI)Hs.355753
Alternative Splicing GalleryENSG00000158669
Gene ExpressionAGPAT6 [ NCBI-GEO ]   AGPAT6 [ EBI - ARRAY_EXPRESS ]   AGPAT6 [ SEEK ]   AGPAT6 [ MEM ]
Gene Expression Viewer (FireBrowse)AGPAT6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)137964
GTEX Portal (Tissue expression)AGPAT6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UL3
Splice isoforms : SwissVarQ86UL3
Catalytic activity : Enzyme2.3.1.15 [ Enzyme-Expasy ]   2.3.1.152.3.1.15 [ IntEnz-EBI ]   2.3.1.15 [ BRENDA ]   2.3.1.15 [ KEGG ]   
PhosPhoSitePlusQ86UL3
Domains : Interpro (EBI)Plipid/glycerol_acylTrfase   
Domain families : Pfam (Sanger)Acyltransferase (PF01553)   
Domain families : Pfam (NCBI)pfam01553   
Domain families : Smart (EMBL)PlsC (SM00563)  
Conserved Domain (NCBI)AGPAT6
DMDM Disease mutations137964
Blocks (Seattle)AGPAT6
SuperfamilyQ86UL3
Human Protein AtlasENSG00000158669
Peptide AtlasQ86UL3
HPRD12175
IPIIPI00016070   IPI00978987   IPI00982342   IPI00982997   
Protein Interaction databases
DIP (DOE-UCLA)Q86UL3
IntAct (EBI)Q86UL3
FunCoupENSG00000158669
BioGRIDAGPAT6
STRING (EMBL)AGPAT6
ZODIACAGPAT6
Ontologies - Pathways
QuickGOQ86UL3
Ontology : AmiGOglandular epithelial cell maturation  1-acylglycerol-3-phosphate O-acyltransferase activity  glycerol-3-phosphate O-acyltransferase activity  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  fatty acid metabolic process  acyl-CoA metabolic process  phospholipid metabolic process  phosphatidic acid biosynthetic process  phosphatidylcholine biosynthetic process  lactation  lipid biosynthetic process  membrane  integral component of membrane  CDP-diacylglycerol biosynthetic process  triglyceride biosynthetic process  triglyceride biosynthetic process  triglyceride biosynthetic process  regulation of multicellular organism growth  cellular lipid metabolic process  small molecule metabolic process  diacylglycerol metabolic process  glycerophospholipid biosynthetic process  
Ontology : EGO-EBIglandular epithelial cell maturation  1-acylglycerol-3-phosphate O-acyltransferase activity  glycerol-3-phosphate O-acyltransferase activity  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  fatty acid metabolic process  acyl-CoA metabolic process  phospholipid metabolic process  phosphatidic acid biosynthetic process  phosphatidylcholine biosynthetic process  lactation  lipid biosynthetic process  membrane  integral component of membrane  CDP-diacylglycerol biosynthetic process  triglyceride biosynthetic process  triglyceride biosynthetic process  triglyceride biosynthetic process  regulation of multicellular organism growth  cellular lipid metabolic process  small molecule metabolic process  diacylglycerol metabolic process  glycerophospholipid biosynthetic process  
Pathways : KEGGGlycerolipid metabolism    Glycerophospholipid metabolism   
NDEx NetworkAGPAT6
Atlas of Cancer Signalling NetworkAGPAT6
Wikipedia pathwaysAGPAT6
Orthology - Evolution
OrthoDB137964
GeneTree (enSembl)ENSG00000158669
Phylogenetic Trees/Animal Genes : TreeFamAGPAT6
HOVERGENQ86UL3
HOGENOMQ86UL3
Homologs : HomoloGeneAGPAT6
Homology/Alignments : Family Browser (UCSC)AGPAT6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGPAT6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGPAT6
dbVarAGPAT6
ClinVarAGPAT6
1000_GenomesAGPAT6 
Exome Variant ServerAGPAT6
ExAC (Exome Aggregation Consortium)AGPAT6 (select the gene name)
Genetic variants : HAPMAP137964
Genomic Variants (DGV)AGPAT6 [DGVbeta]
DECIPHER (Syndromes)8:41435707-41482520  ENSG00000158669
CONAN: Copy Number AnalysisAGPAT6 
Mutations
ICGC Data PortalAGPAT6 
TCGA Data PortalAGPAT6 
Broad Tumor PortalAGPAT6
OASIS PortalAGPAT6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGPAT6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGPAT6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGPAT6
DgiDB (Drug Gene Interaction Database)AGPAT6
DoCM (Curated mutations)AGPAT6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGPAT6 (select a term)
intoGenAGPAT6
Cancer3DAGPAT6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608143   
Orphanet
MedgenAGPAT6
Genetic Testing Registry AGPAT6
NextProtQ86UL3 [Medical]
TSGene137964
GENETestsAGPAT6
Huge Navigator AGPAT6 [HugePedia]
snp3D : Map Gene to Disease137964
BioCentury BCIQAGPAT6
ClinGenAGPAT6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD137964
Chemical/Pharm GKB GenePA142672637
Clinical trialAGPAT6
Miscellaneous
canSAR (ICR)AGPAT6 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGPAT6
EVEXAGPAT6
GoPubMedAGPAT6
iHOPAGPAT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:57 CET 2017

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