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AGR3 (anterior gradient 3, protein disulphide isomerase family member)

Identity

Alias_namesanterior gradient 3 homolog (Xenopus laevis)
Alias_symbol (synonym)HAG3
hAG-3
BCMP11
PDIA18
Other aliasAG-3
AG3
HGNC (Hugo) AGR3
LocusID (NCBI) 155465
Atlas_Id 783
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 16859406 and ends at 16881989 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CUX1 (7q22.1) / AGR3 (7p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGR3   24167
Cards
Entrez_Gene (NCBI)AGR3  155465  anterior gradient 3, protein disulphide isomerase family member
AliasesAG-3; AG3; BCMP11; HAG3; 
PDIA18; hAG-3
GeneCards (Weizmann)AGR3
Ensembl hg19 (Hinxton)ENSG00000173467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173467 [Gene_View]  chr7:16859406-16881989 [Contig_View]  AGR3 [Vega]
ICGC DataPortalENSG00000173467
TCGA cBioPortalAGR3
AceView (NCBI)AGR3
Genatlas (Paris)AGR3
WikiGenes155465
SOURCE (Princeton)AGR3
Genetics Home Reference (NIH)AGR3
Genomic and cartography
GoldenPath hg38 (UCSC)AGR3  -     chr7:16859406-16881989 -  7p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGR3  -     7p21.1   [Description]    (hg19-Feb_2009)
EnsemblAGR3 - 7p21.1 [CytoView hg19]  AGR3 - 7p21.1 [CytoView hg38]
Mapping of homologs : NCBIAGR3 [Mapview hg19]  AGR3 [Mapview hg38]
OMIM609482   
Gene and transcription
Genbank (Entrez)AY069977 AY359065 BC058284 BG540617 BM984550
RefSeq transcript (Entrez)NM_176813
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGR3
Cluster EST : UnigeneHs.100686 [ NCBI ]
CGAP (NCI)Hs.100686
Alternative Splicing GalleryENSG00000173467
Gene ExpressionAGR3 [ NCBI-GEO ]   AGR3 [ EBI - ARRAY_EXPRESS ]   AGR3 [ SEEK ]   AGR3 [ MEM ]
Gene Expression Viewer (FireBrowse)AGR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)155465
GTEX Portal (Tissue expression)AGR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD06
Splice isoforms : SwissVarQ8TD06
PhosPhoSitePlusQ8TD06
Domains : Interpro (EBI)Thioredoxin-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AGR3
DMDM Disease mutations155465
Blocks (Seattle)AGR3
PDB (SRS)3PH9   
PDB (PDBSum)3PH9   
PDB (IMB)3PH9   
PDB (RSDB)3PH9   
Structural Biology KnowledgeBase3PH9   
SCOP (Structural Classification of Proteins)3PH9   
CATH (Classification of proteins structures)3PH9   
SuperfamilyQ8TD06
Human Protein AtlasENSG00000173467
Peptide AtlasQ8TD06
HPRD16545
IPIIPI00152409   IPI00893886   IPI00894341   
Protein Interaction databases
DIP (DOE-UCLA)Q8TD06
IntAct (EBI)Q8TD06
FunCoupENSG00000173467
BioGRIDAGR3
STRING (EMBL)AGR3
ZODIACAGR3
Ontologies - Pathways
QuickGOQ8TD06
Ontology : AmiGOdystroglycan binding  protein binding  cellular_component  endoplasmic reticulum  endoplasmic reticulum  biological_process  cell differentiation  negative regulation of cell death  
Ontology : EGO-EBIdystroglycan binding  protein binding  cellular_component  endoplasmic reticulum  endoplasmic reticulum  biological_process  cell differentiation  negative regulation of cell death  
NDEx NetworkAGR3
Atlas of Cancer Signalling NetworkAGR3
Wikipedia pathwaysAGR3
Orthology - Evolution
OrthoDB155465
GeneTree (enSembl)ENSG00000173467
Phylogenetic Trees/Animal Genes : TreeFamAGR3
HOVERGENQ8TD06
HOGENOMQ8TD06
Homologs : HomoloGeneAGR3
Homology/Alignments : Family Browser (UCSC)AGR3
Gene fusions - Rearrangements
Fusion : MitelmanCUX1/AGR3 [7q22.1/7p21.1]  [inv(7)(p21q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGR3
dbVarAGR3
ClinVarAGR3
1000_GenomesAGR3 
Exome Variant ServerAGR3
ExAC (Exome Aggregation Consortium)AGR3 (select the gene name)
Genetic variants : HAPMAP155465
Genomic Variants (DGV)AGR3 [DGVbeta]
DECIPHERAGR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGR3 
Mutations
ICGC Data PortalAGR3 
TCGA Data PortalAGR3 
Broad Tumor PortalAGR3
OASIS PortalAGR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGR3
DgiDB (Drug Gene Interaction Database)AGR3
DoCM (Curated mutations)AGR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGR3 (select a term)
intoGenAGR3
Cancer3DAGR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609482   
Orphanet
MedgenAGR3
Genetic Testing Registry AGR3
NextProtQ8TD06 [Medical]
TSGene155465
GENETestsAGR3
Target ValidationAGR3
Huge Navigator AGR3 [HugePedia]
snp3D : Map Gene to Disease155465
BioCentury BCIQAGR3
ClinGenAGR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD155465
Chemical/Pharm GKB GenePA162375917
Clinical trialAGR3
Miscellaneous
canSAR (ICR)AGR3 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGR3
EVEXAGR3
GoPubMedAGR3
iHOPAGR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:23:09 CEST 2017

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