Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AGRP (agouti related neuropeptide)

Identity

Alias_namesagouti (mouse) related protein
agouti related protein homolog (mouse)
Alias_symbol (synonym)Agrt
ART
ASIP2
Other aliasAGRT
HGNC (Hugo) AGRP
LocusID (NCBI) 181
Atlas_Id 55051
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67516474 and ends at 67517716 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGRP   330
Cards
Entrez_Gene (NCBI)AGRP  181  agouti related neuropeptide
AliasesAGRT; ART; ASIP2
GeneCards (Weizmann)AGRP
Ensembl hg19 (Hinxton)ENSG00000159723 [Gene_View]  chr16:67516474-67517716 [Contig_View]  AGRP [Vega]
Ensembl hg38 (Hinxton)ENSG00000159723 [Gene_View]  chr16:67516474-67517716 [Contig_View]  AGRP [Vega]
ICGC DataPortalENSG00000159723
TCGA cBioPortalAGRP
AceView (NCBI)AGRP
Genatlas (Paris)AGRP
WikiGenes181
SOURCE (Princeton)AGRP
Genetics Home Reference (NIH)AGRP
Genomic and cartography
GoldenPath hg19 (UCSC)AGRP  -     chr16:67516474-67517716 -  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AGRP  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblAGRP - 16q22.1 [CytoView hg19]  AGRP - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIAGRP [Mapview hg19]  AGRP [Mapview hg38]
OMIM601665   602311   
Gene and transcription
Genbank (Entrez)BC110443 U88063 U89485
RefSeq transcript (Entrez)NM_001138
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_011482 NG_011501 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)AGRP
Cluster EST : UnigeneHs.104633 [ NCBI ]
CGAP (NCI)Hs.104633
Alternative Splicing GalleryENSG00000159723
Gene ExpressionAGRP [ NCBI-GEO ]   AGRP [ EBI - ARRAY_EXPRESS ]   AGRP [ SEEK ]   AGRP [ MEM ]
Gene Expression Viewer (FireBrowse)AGRP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)181
GTEX Portal (Tissue expression)AGRP
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00253   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00253  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00253
Splice isoforms : SwissVarO00253
PhosPhoSitePlusO00253
Domaine pattern : Prosite (Expaxy)AGOUTI_1 (PS60024)    AGOUTI_2 (PS51150)   
Domains : Interpro (EBI)Agouti    Agouti_dom   
Domain families : Pfam (Sanger)Agouti (PF05039)   
Domain families : Pfam (NCBI)pfam05039   
Domain families : Smart (EMBL)Agouti (SM00792)  
Conserved Domain (NCBI)AGRP
DMDM Disease mutations181
Blocks (Seattle)AGRP
PDB (SRS)1HYK    1MR0    2IQV   
PDB (PDBSum)1HYK    1MR0    2IQV   
PDB (IMB)1HYK    1MR0    2IQV   
PDB (RSDB)1HYK    1MR0    2IQV   
Structural Biology KnowledgeBase1HYK    1MR0    2IQV   
SCOP (Structural Classification of Proteins)1HYK    1MR0    2IQV   
CATH (Classification of proteins structures)1HYK    1MR0    2IQV   
SuperfamilyO00253
Human Protein AtlasENSG00000159723
Peptide AtlasO00253
HPRD09079
IPIIPI00010869   
Protein Interaction databases
DIP (DOE-UCLA)O00253
IntAct (EBI)O00253
FunCoupENSG00000159723
BioGRIDAGRP
STRING (EMBL)AGRP
ZODIACAGRP
Ontologies - Pathways
QuickGOO00253
Ontology : AmiGOreceptor binding  neuropeptide hormone activity  extracellular space  Golgi lumen  neuropeptide signaling pathway  circadian rhythm  feeding behavior  adult feeding behavior  photoperiodism  hormone-mediated signaling pathway  response to insulin  eating behavior  neuronal cell body  maternal process involved in female pregnancy  regulation of feeding behavior  regulation of feeding behavior  extracellular exosome  positive regulation of feeding behavior  
Ontology : EGO-EBIreceptor binding  neuropeptide hormone activity  extracellular space  Golgi lumen  neuropeptide signaling pathway  circadian rhythm  feeding behavior  adult feeding behavior  photoperiodism  hormone-mediated signaling pathway  response to insulin  eating behavior  neuronal cell body  maternal process involved in female pregnancy  regulation of feeding behavior  regulation of feeding behavior  extracellular exosome  positive regulation of feeding behavior  
Pathways : KEGGAdipocytokine signaling pathway   
NDEx NetworkAGRP
Atlas of Cancer Signalling NetworkAGRP
Wikipedia pathwaysAGRP
Orthology - Evolution
OrthoDB181
GeneTree (enSembl)ENSG00000159723
Phylogenetic Trees/Animal Genes : TreeFamAGRP
HOVERGENO00253
HOGENOMO00253
Homologs : HomoloGeneAGRP
Homology/Alignments : Family Browser (UCSC)AGRP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGRP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGRP
dbVarAGRP
ClinVarAGRP
1000_GenomesAGRP 
Exome Variant ServerAGRP
ExAC (Exome Aggregation Consortium)AGRP (select the gene name)
Genetic variants : HAPMAP181
Genomic Variants (DGV)AGRP [DGVbeta]
DECIPHER (Syndromes)16:67516474-67517716  ENSG00000159723
CONAN: Copy Number AnalysisAGRP 
Mutations
ICGC Data PortalAGRP 
TCGA Data PortalAGRP 
Broad Tumor PortalAGRP
OASIS PortalAGRP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGRP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGRP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGRP
DgiDB (Drug Gene Interaction Database)AGRP
DoCM (Curated mutations)AGRP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGRP (select a term)
intoGenAGRP
Cancer3DAGRP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601665    602311   
Orphanet
MedgenAGRP
Genetic Testing Registry AGRP
NextProtO00253 [Medical]
TSGene181
GENETestsAGRP
Huge Navigator AGRP [HugePedia]
snp3D : Map Gene to Disease181
BioCentury BCIQAGRP
ClinGenAGRP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD181
Chemical/Pharm GKB GenePA24627
Clinical trialAGRP
Miscellaneous
canSAR (ICR)AGRP (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGRP
EVEXAGRP
GoPubMedAGRP
iHOPAGRP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:55:15 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.