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AGTPBP1 (ATP/GTP binding protein 1)

Identity

Alias_symbol (synonym)KIAA1035
Nna1
CCP1
Other aliasNNA1
HGNC (Hugo) AGTPBP1
LocusID (NCBI) 23287
Atlas_Id 60209
Location 9q21.33  [Link to chromosome band 9q21]
Location_base_pair Starts at 85546539 and ends at 85742029 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DAPK1 (9q21.33) / AGTPBP1 (9q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGTPBP1   17258
Cards
Entrez_Gene (NCBI)AGTPBP1  23287  ATP/GTP binding protein 1
AliasesCCP1; NNA1
GeneCards (Weizmann)AGTPBP1
Ensembl hg19 (Hinxton)ENSG00000135049 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135049 [Gene_View]  chr9:85546539-85742029 [Contig_View]  AGTPBP1 [Vega]
ICGC DataPortalENSG00000135049
TCGA cBioPortalAGTPBP1
AceView (NCBI)AGTPBP1
Genatlas (Paris)AGTPBP1
WikiGenes23287
SOURCE (Princeton)AGTPBP1
Genetics Home Reference (NIH)AGTPBP1
Genomic and cartography
GoldenPath hg38 (UCSC)AGTPBP1  -     chr9:85546539-85742029 -  9q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGTPBP1  -     9q21.33   [Description]    (hg19-Feb_2009)
EnsemblAGTPBP1 - 9q21.33 [CytoView hg19]  AGTPBP1 - 9q21.33 [CytoView hg38]
Mapping of homologs : NCBIAGTPBP1 [Mapview hg19]  AGTPBP1 [Mapview hg38]
OMIM606830   
Gene and transcription
Genbank (Entrez)AB028958 AJ420433 AJ437018 AK001544 AK022562
RefSeq transcript (Entrez)NM_001286715 NM_001286717 NM_001330701 NM_015239
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGTPBP1
Cluster EST : UnigeneHs.719980 [ NCBI ]
CGAP (NCI)Hs.719980
Alternative Splicing GalleryENSG00000135049
Gene ExpressionAGTPBP1 [ NCBI-GEO ]   AGTPBP1 [ EBI - ARRAY_EXPRESS ]   AGTPBP1 [ SEEK ]   AGTPBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)AGTPBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23287
GTEX Portal (Tissue expression)AGTPBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPW5
Splice isoforms : SwissVarQ9UPW5
Catalytic activity : Enzyme3.4.17.- [ Enzyme-Expasy ]   3.4.17.-3.4.17.- [ IntEnz-EBI ]   3.4.17.- [ BRENDA ]   3.4.17.- [ KEGG ]   
PhosPhoSitePlusQ9UPW5
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Cytosolic_aminopeptidase_1    Peptidase_M14   
Domain families : Pfam (Sanger)Peptidase_M14 (PF00246)   
Domain families : Pfam (NCBI)pfam00246   
Conserved Domain (NCBI)AGTPBP1
DMDM Disease mutations23287
Blocks (Seattle)AGTPBP1
SuperfamilyQ9UPW5
Human Protein AtlasENSG00000135049
Peptide AtlasQ9UPW5
HPRD08442
IPIIPI00167865   IPI00942428   IPI00418530   IPI00910462   IPI00383005   IPI00477499   IPI00477127   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPW5
IntAct (EBI)Q9UPW5
FunCoupENSG00000135049
BioGRIDAGTPBP1
STRING (EMBL)AGTPBP1
ZODIACAGTPBP1
Ontologies - Pathways
QuickGOQ9UPW5
Ontology : AmiGOeye photoreceptor cell differentiation  metallocarboxypeptidase activity  nucleus  nucleolus  cytoplasm  mitochondrion  cytosol  proteolysis  mitochondrion organization  zinc ion binding  tubulin binding  cerebellar Purkinje cell differentiation  olfactory bulb development  C-terminal protein deglutamylation  protein side chain deglutamylation  intracellular membrane-bounded organelle  neuromuscular process  
Ontology : EGO-EBIeye photoreceptor cell differentiation  metallocarboxypeptidase activity  nucleus  nucleolus  cytoplasm  mitochondrion  cytosol  proteolysis  mitochondrion organization  zinc ion binding  tubulin binding  cerebellar Purkinje cell differentiation  olfactory bulb development  C-terminal protein deglutamylation  protein side chain deglutamylation  intracellular membrane-bounded organelle  neuromuscular process  
NDEx NetworkAGTPBP1
Atlas of Cancer Signalling NetworkAGTPBP1
Wikipedia pathwaysAGTPBP1
Orthology - Evolution
OrthoDB23287
GeneTree (enSembl)ENSG00000135049
Phylogenetic Trees/Animal Genes : TreeFamAGTPBP1
HOVERGENQ9UPW5
HOGENOMQ9UPW5
Homologs : HomoloGeneAGTPBP1
Homology/Alignments : Family Browser (UCSC)AGTPBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGTPBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGTPBP1
dbVarAGTPBP1
ClinVarAGTPBP1
1000_GenomesAGTPBP1 
Exome Variant ServerAGTPBP1
ExAC (Exome Aggregation Consortium)AGTPBP1 (select the gene name)
Genetic variants : HAPMAP23287
Genomic Variants (DGV)AGTPBP1 [DGVbeta]
DECIPHERAGTPBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGTPBP1 
Mutations
ICGC Data PortalAGTPBP1 
TCGA Data PortalAGTPBP1 
Broad Tumor PortalAGTPBP1
OASIS PortalAGTPBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGTPBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGTPBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGTPBP1
DgiDB (Drug Gene Interaction Database)AGTPBP1
DoCM (Curated mutations)AGTPBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGTPBP1 (select a term)
intoGenAGTPBP1
Cancer3DAGTPBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606830   
Orphanet
MedgenAGTPBP1
Genetic Testing Registry AGTPBP1
NextProtQ9UPW5 [Medical]
TSGene23287
GENETestsAGTPBP1
Target ValidationAGTPBP1
Huge Navigator AGTPBP1 [HugePedia]
snp3D : Map Gene to Disease23287
BioCentury BCIQAGTPBP1
ClinGenAGTPBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23287
Chemical/Pharm GKB GenePA24630
Clinical trialAGTPBP1
Miscellaneous
canSAR (ICR)AGTPBP1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGTPBP1
EVEXAGTPBP1
GoPubMedAGTPBP1
iHOPAGTPBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:04 CEST 2017

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