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AGTRAP (angiotensin II receptor associated protein)

Identity

Alias_symbol (synonym)ATRAP
Other alias
HGNC (Hugo) AGTRAP
LocusID (NCBI) 57085
Atlas_Id 52968
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 11736085 and ends at 11750771 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AGTRAP (1p36.22) / BRAF (7q34)AGTRAP (1p36.22) / ERP44 (9q31.1)ARL17A (17q21.31) / AGTRAP (1p36.22)
DRAXIN (1p36.22) / AGTRAP (1p36.22)KIF1B (1p36.22) / AGTRAP (1p36.22)AGTRAP 1p36.22 / BRAF 7q34
KIF1B 1p36.22 / AGTRAP 1p36.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AGTRAP   13539
Cards
Entrez_Gene (NCBI)AGTRAP  57085  angiotensin II receptor associated protein
AliasesATRAP
GeneCards (Weizmann)AGTRAP
Ensembl hg19 (Hinxton)ENSG00000177674 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177674 [Gene_View]  chr1:11736085-11750771 [Contig_View]  AGTRAP [Vega]
ICGC DataPortalENSG00000177674
TCGA cBioPortalAGTRAP
AceView (NCBI)AGTRAP
Genatlas (Paris)AGTRAP
WikiGenes57085
SOURCE (Princeton)AGTRAP
Genetics Home Reference (NIH)AGTRAP
Genomic and cartography
GoldenPath hg38 (UCSC)AGTRAP  -     chr1:11736085-11750771 +  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGTRAP  -     1p36.22   [Description]    (hg19-Feb_2009)
EnsemblAGTRAP - 1p36.22 [CytoView hg19]  AGTRAP - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBIAGTRAP [Mapview hg19]  AGTRAP [Mapview hg38]
OMIM608729   
Gene and transcription
Genbank (Entrez)AF165187 AF312374 AI741916 AK290042 BC011946
RefSeq transcript (Entrez)NM_001040194 NM_001040195 NM_001040196 NM_001040197 NM_020350
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGTRAP
Cluster EST : UnigeneHs.464438 [ NCBI ]
CGAP (NCI)Hs.464438
Alternative Splicing GalleryENSG00000177674
Gene ExpressionAGTRAP [ NCBI-GEO ]   AGTRAP [ EBI - ARRAY_EXPRESS ]   AGTRAP [ SEEK ]   AGTRAP [ MEM ]
Gene Expression Viewer (FireBrowse)AGTRAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57085
GTEX Portal (Tissue expression)AGTRAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6RW13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6RW13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6RW13
Splice isoforms : SwissVarQ6RW13
PhosPhoSitePlusQ6RW13
Domains : Interpro (EBI)AGTRAP   
Domain families : Pfam (Sanger)AGTRAP (PF06396)   
Domain families : Pfam (NCBI)pfam06396   
Domain families : Smart (EMBL)AGTRAP (SM00805)  
Domain structure : Prodom (Prabi Lyon)PD357679 (PD357679)   
Conserved Domain (NCBI)AGTRAP
DMDM Disease mutations57085
Blocks (Seattle)AGTRAP
SuperfamilyQ6RW13
Human Protein AtlasENSG00000177674
Peptide AtlasQ6RW13
HPRD16379
IPIIPI00102501   IPI00513986   IPI01010838   IPI00641159   IPI00743242   IPI00644819   IPI00963882   IPI00964326   
Protein Interaction databases
DIP (DOE-UCLA)Q6RW13
IntAct (EBI)Q6RW13
FunCoupENSG00000177674
BioGRIDAGTRAP
STRING (EMBL)AGTRAP
ZODIACAGTRAP
Ontologies - Pathways
QuickGOQ6RW13
Ontology : AmiGOGolgi membrane  response to hypoxia  angiotensin type II receptor activity  protein binding  nucleoplasm  endoplasmic reticulum membrane  cytosol  plasma membrane  cell cortex  regulation of blood pressure  integral component of membrane  cytoplasmic vesicle membrane  angiotensin-activated signaling pathway  intracellular membrane-bounded organelle  
Ontology : EGO-EBIGolgi membrane  response to hypoxia  angiotensin type II receptor activity  protein binding  nucleoplasm  endoplasmic reticulum membrane  cytosol  plasma membrane  cell cortex  regulation of blood pressure  integral component of membrane  cytoplasmic vesicle membrane  angiotensin-activated signaling pathway  intracellular membrane-bounded organelle  
NDEx NetworkAGTRAP
Atlas of Cancer Signalling NetworkAGTRAP
Wikipedia pathwaysAGTRAP
Orthology - Evolution
OrthoDB57085
GeneTree (enSembl)ENSG00000177674
Phylogenetic Trees/Animal Genes : TreeFamAGTRAP
HOVERGENQ6RW13
HOGENOMQ6RW13
Homologs : HomoloGeneAGTRAP
Homology/Alignments : Family Browser (UCSC)AGTRAP
Gene fusions - Rearrangements
Fusion : MitelmanAGTRAP/BRAF [1p36.22/7q34]  
Fusion : MitelmanKIF1B/AGTRAP [1p36.22/1p36.22]  [t(1;1)(p36;p36)]  
Fusion: TCGAKIF1B 1p36.22 AGTRAP 1p36.22 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGTRAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGTRAP
dbVarAGTRAP
ClinVarAGTRAP
1000_GenomesAGTRAP 
Exome Variant ServerAGTRAP
ExAC (Exome Aggregation Consortium)AGTRAP (select the gene name)
Genetic variants : HAPMAP57085
Genomic Variants (DGV)AGTRAP [DGVbeta]
DECIPHERAGTRAP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGTRAP 
Mutations
ICGC Data PortalAGTRAP 
TCGA Data PortalAGTRAP 
Broad Tumor PortalAGTRAP
OASIS PortalAGTRAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAGTRAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAGTRAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AGTRAP
DgiDB (Drug Gene Interaction Database)AGTRAP
DoCM (Curated mutations)AGTRAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGTRAP (select a term)
intoGenAGTRAP
Cancer3DAGTRAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608729   
Orphanet
MedgenAGTRAP
Genetic Testing Registry AGTRAP
NextProtQ6RW13 [Medical]
TSGene57085
GENETestsAGTRAP
Target ValidationAGTRAP
Huge Navigator AGTRAP [HugePedia]
snp3D : Map Gene to Disease57085
BioCentury BCIQAGTRAP
ClinGenAGTRAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57085
Chemical/Pharm GKB GenePA38363
Clinical trialAGTRAP
Miscellaneous
canSAR (ICR)AGTRAP (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGTRAP
EVEXAGTRAP
GoPubMedAGTRAP
iHOPAGTRAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:23:10 CEST 2017

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