Atlas of Genetics and Cytogenetics in Oncology and Haematology


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AGVR6190 (uncharacterized LOC643797)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 643797
Atlas_Id 60210
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 92714194 and ends at 92715457 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)AGVR6190  643797  uncharacterized LOC643797
Aliases
GeneCards (Weizmann)AGVR6190
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:92714194-92715457 [Contig_View]  AGVR6190 [Vega]
TCGA cBioPortalAGVR6190
AceView (NCBI)AGVR6190
Genatlas (Paris)AGVR6190
WikiGenes643797
SOURCE (Princeton)AGVR6190
Genetics Home Reference (NIH)AGVR6190
Genomic and cartography
GoldenPath hg38 (UCSC)AGVR6190  -     chr15:92714194-92715457 +  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AGVR6190  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblAGVR6190 - 15q26.1 [CytoView hg19]  AGVR6190 - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIAGVR6190 [Mapview hg19]  AGVR6190 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358245
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AGVR6190
Cluster EST : UnigeneHs.710272 [ NCBI ]
CGAP (NCI)Hs.710272
Gene ExpressionAGVR6190 [ NCBI-GEO ]   AGVR6190 [ EBI - ARRAY_EXPRESS ]   AGVR6190 [ SEEK ]   AGVR6190 [ MEM ]
Gene Expression Viewer (FireBrowse)AGVR6190 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643797
GTEX Portal (Tissue expression)AGVR6190
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXQ8
Splice isoforms : SwissVarQ6UXQ8
PhosPhoSitePlusQ6UXQ8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AGVR6190
DMDM Disease mutations643797
Blocks (Seattle)AGVR6190
SuperfamilyQ6UXQ8
Peptide AtlasQ6UXQ8
IPIIPI00432681   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXQ8
IntAct (EBI)Q6UXQ8
BioGRIDAGVR6190
STRING (EMBL)AGVR6190
ZODIACAGVR6190
Ontologies - Pathways
QuickGOQ6UXQ8
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkAGVR6190
Atlas of Cancer Signalling NetworkAGVR6190
Wikipedia pathwaysAGVR6190
Orthology - Evolution
OrthoDB643797
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6UXQ8
HOGENOMQ6UXQ8
Homologs : HomoloGeneAGVR6190
Homology/Alignments : Family Browser (UCSC)AGVR6190
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAGVR6190 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AGVR6190
dbVarAGVR6190
ClinVarAGVR6190
1000_GenomesAGVR6190 
Exome Variant ServerAGVR6190
ExAC (Exome Aggregation Consortium)AGVR6190 (select the gene name)
Genetic variants : HAPMAP643797
Genomic Variants (DGV)AGVR6190 [DGVbeta]
DECIPHERAGVR6190 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAGVR6190 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch AGVR6190
DgiDB (Drug Gene Interaction Database)AGVR6190
DoCM (Curated mutations)AGVR6190 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AGVR6190 (select a term)
intoGenAGVR6190
Cancer3DAGVR6190(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAGVR6190
Genetic Testing Registry AGVR6190
NextProtQ6UXQ8 [Medical]
TSGene643797
GENETestsAGVR6190
Target ValidationAGVR6190
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease643797
BioCentury BCIQAGVR6190
ClinGenAGVR6190
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643797
Clinical trialAGVR6190
Miscellaneous
canSAR (ICR)AGVR6190 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAGVR6190
EVEXAGVR6190
GoPubMedAGVR6190
iHOPAGVR6190
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:04 CEST 2017

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