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AHCTF1 (AT-hook containing transcription factor 1)

Identity

Alias (NCBI)ELYS
MST108
MSTP108
TMBS62
HGNC (Hugo) AHCTF1
HGNC Alias symbELYS
HGNC Alias nameELYS transcription factor like protein TMBS62
HGNC Previous nameAT hook containing transcription factor 1
LocusID (NCBI) 25909
Atlas_Id 54112
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 246839098 and ends at 246931358 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AHCTF1 (1q44) / GIGYF2 (2q37.1)AHCTF1 (1q44) / NAAA (4q21.1)FBP1 (9q22.32) / AHCTF1 (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)AHCTF1   24618
Cards
Entrez_Gene (NCBI)AHCTF1    AT-hook containing transcription factor 1
AliasesELYS; MST108; MSTP108; TMBS62
GeneCards (Weizmann)AHCTF1
Ensembl hg19 (Hinxton)ENSG00000153207 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153207 [Gene_View]  ENSG00000153207 [Sequence]  chr1:246839098-246931358 [Contig_View]  AHCTF1 [Vega]
ICGC DataPortalENSG00000153207
TCGA cBioPortalAHCTF1
AceView (NCBI)AHCTF1
Genatlas (Paris)AHCTF1
SOURCE (Princeton)AHCTF1
Genetics Home Reference (NIH)AHCTF1
Genomic and cartography
GoldenPath hg38 (UCSC)AHCTF1  -     chr1:246839098-246931358 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AHCTF1  -     1q44   [Description]    (hg19-Feb_2009)
GoldenPathAHCTF1 - 1q44 [CytoView hg19]  AHCTF1 - 1q44 [CytoView hg38]
ImmunoBaseENSG00000153207
Genome Data Viewer NCBIAHCTF1 [Mapview hg19]  
OMIM610853   
Gene and transcription
Genbank (Entrez)AB059277 AF173978 AK091364 AK091510 AK095398
RefSeq transcript (Entrez)NM_001323342 NM_001323343 NM_015446 NM_175865
Consensus coding sequences : CCDS (NCBI)AHCTF1
Gene ExpressionAHCTF1 [ NCBI-GEO ]   AHCTF1 [ EBI - ARRAY_EXPRESS ]   AHCTF1 [ SEEK ]   AHCTF1 [ MEM ]
Gene Expression Viewer (FireBrowse)AHCTF1 [ Firebrowse - Broad ]
GenevisibleExpression of AHCTF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25909
GTEX Portal (Tissue expression)AHCTF1
Human Protein AtlasENSG00000153207-AHCTF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WYP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WYP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WYP5
PhosPhoSitePlusQ8WYP5
Domains : Interpro (EBI)ELYS-bb    ELYS_dom    Quinoprotein_ADH-like_supfam   
Domain families : Pfam (Sanger)ELYS (PF13934)    ELYS-bb (PF16687)   
Domain families : Pfam (NCBI)pfam13934    pfam16687   
Conserved Domain (NCBI)AHCTF1
SuperfamilyQ8WYP5
AlphaFold pdb e-kbQ8WYP5   
Human Protein Atlas [tissue]ENSG00000153207-AHCTF1 [tissue]
HPRD09935
Protein Interaction databases
DIP (DOE-UCLA)Q8WYP5
IntAct (EBI)Q8WYP5
BioGRIDAHCTF1
STRING (EMBL)AHCTF1
ZODIACAHCTF1
Ontologies - Pathways
QuickGOQ8WYP5
Ontology : AmiGOkinetochore  chromatin  DNA binding  nucleus  nucleoplasm  cytosol  mitotic spindle organization  mitotic nuclear membrane reassembly  protein transport  nuclear matrix  nuclear membrane  regulation of cytokinesis  mRNA transport  nuclear pore complex assembly  cell division  extracellular exosome  
Ontology : EGO-EBIkinetochore  chromatin  DNA binding  nucleus  nucleoplasm  cytosol  mitotic spindle organization  mitotic nuclear membrane reassembly  protein transport  nuclear matrix  nuclear membrane  regulation of cytokinesis  mRNA transport  nuclear pore complex assembly  cell division  extracellular exosome  
NDEx NetworkAHCTF1
Atlas of Cancer Signalling NetworkAHCTF1
Wikipedia pathwaysAHCTF1
Orthology - Evolution
OrthoDB25909
GeneTree (enSembl)ENSG00000153207
Phylogenetic Trees/Animal Genes : TreeFamAHCTF1
Homologs : HomoloGeneAHCTF1
Homology/Alignments : Family Browser (UCSC)AHCTF1
Gene fusions - Rearrangements
Fusion : MitelmanAHCTF1/NAAA [1q44/4q21.1]  
Fusion : QuiverAHCTF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAHCTF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AHCTF1
dbVarAHCTF1
ClinVarAHCTF1
MonarchAHCTF1
1000_GenomesAHCTF1 
Exome Variant ServerAHCTF1
GNOMAD BrowserENSG00000153207
Varsome BrowserAHCTF1
ACMGAHCTF1 variants
VarityQ8WYP5
Genomic Variants (DGV)AHCTF1 [DGVbeta]
DECIPHERAHCTF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAHCTF1 
Mutations
ICGC Data PortalAHCTF1 
TCGA Data PortalAHCTF1 
Broad Tumor PortalAHCTF1
OASIS PortalAHCTF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAHCTF1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAHCTF1
Mutations and Diseases : HGMDAHCTF1
intOGen PortalAHCTF1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaAHCTF1
DgiDB (Drug Gene Interaction Database)AHCTF1
DoCM (Curated mutations)AHCTF1
CIViC (Clinical Interpretations of Variants in Cancer)AHCTF1
Cancer3DAHCTF1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610853   
Orphanet
DisGeNETAHCTF1
MedgenAHCTF1
Genetic Testing Registry AHCTF1
NextProtQ8WYP5 [Medical]
GENETestsAHCTF1
Target ValidationAHCTF1
Huge Navigator AHCTF1 [HugePedia]
ClinGenAHCTF1
Clinical trials, drugs, therapy
MyCancerGenomeAHCTF1
Protein Interactions : CTDAHCTF1
Pharm GKB GenePA142672631
PharosQ8WYP5
Clinical trialAHCTF1
Miscellaneous
canSAR (ICR)AHCTF1
HarmonizomeAHCTF1
DataMed IndexAHCTF1
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAHCTF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 14:58:52 CEST 2021

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