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AHDC1 (AT hook, DNA binding motif, containing 1)

Identity

Alias_namesAT hook, DNA binding motif, containing 1
Alias_symbol (synonym)DJ159A19.3
RP1-159A19.1
Other aliasMRD25
HGNC (Hugo) AHDC1
LocusID (NCBI) 27245
Atlas_Id 60214
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 27860756 and ends at 27930005 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AHDC1 (1p36.11) / AHDC1 (1p36.11)AHDC1 (1p36.11) / ALCAM (3q13.11)AHDC1 (1p36.11) / MORN1 (1p36.33)
AHDC1 (1p36.11) / TMSB10 (2p11.2)AHDC1 (1p36.11) / WDFY3 (4q21.23)WASF2 (1p36.11) / AHDC1 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AHDC1   25230
Cards
Entrez_Gene (NCBI)AHDC1  27245  AT hook, DNA binding motif, containing 1
AliasesMRD25
GeneCards (Weizmann)AHDC1
Ensembl hg19 (Hinxton)ENSG00000126705 [Gene_View]  chr1:27860756-27930005 [Contig_View]  AHDC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000126705 [Gene_View]  chr1:27860756-27930005 [Contig_View]  AHDC1 [Vega]
ICGC DataPortalENSG00000126705
TCGA cBioPortalAHDC1
AceView (NCBI)AHDC1
Genatlas (Paris)AHDC1
WikiGenes27245
SOURCE (Princeton)AHDC1
Genetics Home Reference (NIH)AHDC1
Genomic and cartography
GoldenPath hg19 (UCSC)AHDC1  -     chr1:27860756-27930005 -  1p36.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AHDC1  -     1p36.11   [Description]    (hg38-Dec_2013)
EnsemblAHDC1 - 1p36.11 [CytoView hg19]  AHDC1 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIAHDC1 [Mapview hg19]  AHDC1 [Mapview hg38]
OMIM615790   615829   
Gene and transcription
Genbank (Entrez)AK125431 BC002677 BC014394 BC064935 BC152907
RefSeq transcript (Entrez)NM_001029882
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_034158 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)AHDC1
Cluster EST : UnigeneHs.469280 [ NCBI ]
CGAP (NCI)Hs.469280
Alternative Splicing GalleryENSG00000126705
Gene ExpressionAHDC1 [ NCBI-GEO ]   AHDC1 [ EBI - ARRAY_EXPRESS ]   AHDC1 [ SEEK ]   AHDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)AHDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27245
GTEX Portal (Tissue expression)AHDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TGY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TGY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TGY3
Splice isoforms : SwissVarQ5TGY3
PhosPhoSitePlusQ5TGY3
Domains : Interpro (EBI)AT_hook_DNA-bd_motif   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)AT_hook (SM00384)  
Conserved Domain (NCBI)AHDC1
DMDM Disease mutations27245
Blocks (Seattle)AHDC1
SuperfamilyQ5TGY3
Human Protein AtlasENSG00000126705
Peptide AtlasQ5TGY3
HPRD10885
IPIIPI00397015   IPI00647865   
Protein Interaction databases
DIP (DOE-UCLA)Q5TGY3
IntAct (EBI)Q5TGY3
FunCoupENSG00000126705
BioGRIDAHDC1
STRING (EMBL)AHDC1
ZODIACAHDC1
Ontologies - Pathways
QuickGOQ5TGY3
Ontology : AmiGODNA binding  
Ontology : EGO-EBIDNA binding  
NDEx NetworkAHDC1
Atlas of Cancer Signalling NetworkAHDC1
Wikipedia pathwaysAHDC1
Orthology - Evolution
OrthoDB27245
GeneTree (enSembl)ENSG00000126705
Phylogenetic Trees/Animal Genes : TreeFamAHDC1
HOVERGENQ5TGY3
HOGENOMQ5TGY3
Homologs : HomoloGeneAHDC1
Homology/Alignments : Family Browser (UCSC)AHDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAHDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AHDC1
dbVarAHDC1
ClinVarAHDC1
1000_GenomesAHDC1 
Exome Variant ServerAHDC1
ExAC (Exome Aggregation Consortium)AHDC1 (select the gene name)
Genetic variants : HAPMAP27245
Genomic Variants (DGV)AHDC1 [DGVbeta]
DECIPHER (Syndromes)1:27860756-27930005  ENSG00000126705
CONAN: Copy Number AnalysisAHDC1 
Mutations
ICGC Data PortalAHDC1 
TCGA Data PortalAHDC1 
Broad Tumor PortalAHDC1
OASIS PortalAHDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAHDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAHDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AHDC1
DgiDB (Drug Gene Interaction Database)AHDC1
DoCM (Curated mutations)AHDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AHDC1 (select a term)
intoGenAHDC1
Cancer3DAHDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615790    615829   
Orphanet23042   
MedgenAHDC1
Genetic Testing Registry AHDC1
NextProtQ5TGY3 [Medical]
TSGene27245
GENETestsAHDC1
Huge Navigator AHDC1 [HugePedia]
snp3D : Map Gene to Disease27245
BioCentury BCIQAHDC1
ClinGenAHDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27245
Chemical/Pharm GKB GenePA142672633
Clinical trialAHDC1
Miscellaneous
canSAR (ICR)AHDC1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAHDC1
EVEXAHDC1
GoPubMedAHDC1
iHOPAHDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:58 CET 2017

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