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AHNAK (AHNAK nucleoprotein)

Identity

Other namesAHNAKRS
HGNC (Hugo) AHNAK
LocusID (NCBI) 79026
Location 11q12.3
Location_base_pair Starts at 62283374 and ends at 62314332 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AHNAK   347
Cards
Entrez_Gene (NCBI)AHNAK  79026  AHNAK nucleoprotein
GeneCards (Weizmann)AHNAK
Ensembl (Hinxton)ENSG00000124942 [Gene_View]  chr11:62283374-62314332 [Contig_View]  AHNAK [Vega]
ICGC DataPortalENSG00000124942
AceView (NCBI)AHNAK
Genatlas (Paris)AHNAK
WikiGenes79026
SOURCE (Princeton)NM_001620 NM_024060
Genomic and cartography
GoldenPath (UCSC)AHNAK  -  11q12.3   chr11:62283374-62314332 -  11q12.3   [Description]    (hg19-Feb_2009)
EnsemblAHNAK - 11q12.3 [CytoView]
Mapping of homologs : NCBIAHNAK [Mapview]
OMIM103390   
Gene and transcription
Genbank (Entrez)AK091153 AK095346 AK128868 AK300376 BC000926
RefSeq transcript (Entrez)NM_001620 NM_024060
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838024 NW_004929380
Consensus coding sequences : CCDS (NCBI)AHNAK
Cluster EST : UnigeneHs.502756 [ NCBI ]
CGAP (NCI)Hs.502756
Alternative Splicing GalleryENSG00000124942
Gene ExpressionAHNAK [ NCBI-GEO ]     AHNAK [ SEEK ]   AHNAK [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ09666 (Uniprot)
NextProtQ09666  [Medical]
With graphics : InterProQ09666
Splice isoforms : SwissVarQ09666 (Swissvar)
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ   
Related proteins : CluSTrQ09666
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PDZ (SM00228)  
DMDM Disease mutations79026
Blocks (Seattle)Q09666
PDB (SRS)4DRW    4FTG    4HRG   
PDB (PDBSum)4DRW    4FTG    4HRG   
PDB (IMB)4DRW    4FTG    4HRG   
PDB (RSDB)4DRW    4FTG    4HRG   
Human Protein AtlasENSG00000124942
Peptide AtlasQ09666
HPRD14684
IPIIPI00021812   IPI00979442   IPI01012911   IPI00031605   IPI00975545   IPI00979461   IPI00981507   IPI00980977   IPI00978926   IPI00980133   
Protein Interaction databases
DIP (DOE-UCLA)Q09666
IntAct (EBI)Q09666
FunCoupENSG00000124942
BioGRIDAHNAK
InParanoidQ09666
Interologous Interaction database Q09666
IntegromeDBAHNAK
STRING (EMBL)AHNAK
Ontologies - Pathways
Ontology : AmiGOprotein binding  nucleus  nucleus  cytoplasm  lysosomal membrane  cytosol  plasma membrane  actin cytoskeleton  membrane  T-tubule  vesicle  sarcolemma  sarcolemma  costamere  regulation of RNA splicing  cell-cell contact zone  S100 protein binding  poly(A) RNA binding  membrane raft  protein oligomerization  extracellular vesicular exosome  structural molecule activity conferring elasticity  regulation of voltage-gated calcium channel activity  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  cytoplasm  lysosomal membrane  cytosol  plasma membrane  actin cytoskeleton  membrane  T-tubule  vesicle  sarcolemma  sarcolemma  costamere  regulation of RNA splicing  cell-cell contact zone  S100 protein binding  poly(A) RNA binding  membrane raft  protein oligomerization  extracellular vesicular exosome  structural molecule activity conferring elasticity  regulation of voltage-gated calcium channel activity  
Protein Interaction DatabaseAHNAK
Wikipedia pathwaysAHNAK
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)AHNAK
SNP (GeneSNP Utah)AHNAK
SNP : HGBaseAHNAK
Genetic variants : HAPMAPAHNAK
1000_GenomesAHNAK 
ICGC programENSG00000124942 
CONAN: Copy Number AnalysisAHNAK 
Somatic Mutations in Cancer : COSMICAHNAK 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDAHNAK
OMIM103390   
MedgenAHNAK
GENETestsAHNAK
Disease Genetic AssociationAHNAK
Huge Navigator AHNAK [HugePedia]  AHNAK [HugeCancerGEM]
Genomic VariantsAHNAK  AHNAK [DGVbeta]
Exome VariantAHNAK
dbVarAHNAK
ClinVarAHNAK
snp3D : Map Gene to Disease79026
General knowledge
Homologs : HomoloGeneAHNAK
Homology/Alignments : Family Browser (UCSC)AHNAK
Phylogenetic Trees/Animal Genes : TreeFamAHNAK
Chemical/Protein Interactions : CTD79026
Chemical/Pharm GKB GenePA24640
Clinical trialAHNAK
Cancer Resource (Charite)ENSG00000124942
Other databases
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
CoreMineAHNAK
iHOPAHNAK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:31:12 CEST 2014

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