Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AHNAK (AHNAK nucleoprotein)

Identity

Alias (NCBI)AHNAKRS
PM227
HGNC (Hugo) AHNAK
HGNC Alias symbMGC5395
HGNC Alias namedesmoyokin
HGNC Previous nameAHNAK nucleoprotein (desmoyokin)
LocusID (NCBI) 79026
Atlas_Id 53725
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62433544 and ends at 62546806 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AHNAK (11q12.3) / AHNAK (11q12.3)AHNAK (11q12.3) / ATP1A1 (1p13.1)AHNAK (11q12.3) / DLC1 (8p22)
AHNAK (11q12.3) / FBXL17 (5q21.3)AHNAK (11q12.3) / GPNMB (7p15.3)AHNAK (11q12.3) / GRIA3 (Xq25)
AHNAK (11q12.3) / RPS6KA4 (11q13.1)AHNAK (11q12.3) / STIP1 (11q13.1)AHNAK (11q12.3) / TPD52 (8q21.13)
AHNAK (11q12.3) / ZNF827 (4q31.21)AHNAK (11q12.3) / ZNFX1 (20q13.13)ARHGAP32 (11q24.3) / AHNAK (11q12.3)
FBXL17 (5q21.3) / AHNAK (11q12.3)GAPDH (12p13.31) / AHNAK (11q12.3)HNRNPUL2 (11q12.3) / AHNAK (11q12.3)
RPL21 (13q12.2) / AHNAK (11q12.3)TSPAN16 (19p13.2) / AHNAK (11q12.3)ZFHX3 (16q22.2) / AHNAK (11q12.3)
AHNAK 11q12.3 / RPS6KA4 11q13.1AHNAK 11q12.3 / STIP1 11q13.1AHNAK 11q12.3 / ZNF827 4q31.21
AHNAK 11q12.3 / ZNFX1 20q13.13ARHGAP32 11q24.3 / AHNAK 11q12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)AHNAK   347
Cards
Entrez_Gene (NCBI)AHNAK    AHNAK nucleoprotein
AliasesAHNAKRS; PM227
GeneCards (Weizmann)AHNAK
Ensembl hg19 (Hinxton)ENSG00000124942 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124942 [Gene_View]  ENSG00000124942 [Sequence]  chr11:62433544-62546806 [Contig_View]  AHNAK [Vega]
ICGC DataPortalENSG00000124942
TCGA cBioPortalAHNAK
AceView (NCBI)AHNAK
Genatlas (Paris)AHNAK
SOURCE (Princeton)AHNAK
Genetics Home Reference (NIH)AHNAK
Genomic and cartography
GoldenPath hg38 (UCSC)AHNAK  -     chr11:62433544-62546806 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AHNAK  -     11q12.3   [Description]    (hg19-Feb_2009)
GoldenPathAHNAK - 11q12.3 [CytoView hg19]  AHNAK - 11q12.3 [CytoView hg38]
ImmunoBaseENSG00000124942
Genome Data Viewer NCBIAHNAK [Mapview hg19]  
OMIM103390   
Gene and transcription
Genbank (Entrez)AK091153 AK095346 AK128868 AK300376 BC000926
RefSeq transcript (Entrez)NM_001346445 NM_001346446 NM_001620 NM_024060
Consensus coding sequences : CCDS (NCBI)AHNAK
Gene ExpressionAHNAK [ NCBI-GEO ]   AHNAK [ EBI - ARRAY_EXPRESS ]   AHNAK [ SEEK ]   AHNAK [ MEM ]
Gene Expression Viewer (FireBrowse)AHNAK [ Firebrowse - Broad ]
GenevisibleExpression of AHNAK in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79026
GTEX Portal (Tissue expression)AHNAK
Human Protein AtlasENSG00000124942-AHNAK [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ09666   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ09666  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ09666
PhosPhoSitePlusQ09666
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ    PDZ_sf   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)AHNAK
PDB (RSDB)4DRW    4FTG    4HRG   
PDB Europe4DRW    4FTG    4HRG   
PDB (PDBSum)4DRW    4FTG    4HRG   
PDB (IMB)4DRW    4FTG    4HRG   
Structural Biology KnowledgeBase4DRW    4FTG    4HRG   
SCOP (Structural Classification of Proteins)4DRW    4FTG    4HRG   
CATH (Classification of proteins structures)4DRW    4FTG    4HRG   
SuperfamilyQ09666
AlphaFold pdb e-kbQ09666   
Human Protein Atlas [tissue]ENSG00000124942-AHNAK [tissue]
HPRD14684
Protein Interaction databases
DIP (DOE-UCLA)Q09666
IntAct (EBI)Q09666
BioGRIDAHNAK
STRING (EMBL)AHNAK
ZODIACAHNAK
Ontologies - Pathways
QuickGOQ09666
Ontology : AmiGORNA binding  protein binding  nucleus  nucleus  nucleus  cytoplasm  cytoplasm  lysosomal membrane  cytosol  cytosol  plasma membrane  focal adhesion  actin cytoskeleton  membrane  T-tubule  vesicle  sarcolemma  sarcolemma  costamere  costamere  regulation of RNA splicing  regulation of RNA splicing  cell-cell contact zone  S100 protein binding  membrane raft  cadherin binding  extracellular exosome  extracellular exosome  structural molecule activity conferring elasticity  regulation of voltage-gated calcium channel activity  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleus  nucleus  cytoplasm  cytoplasm  lysosomal membrane  cytosol  cytosol  plasma membrane  focal adhesion  actin cytoskeleton  membrane  T-tubule  vesicle  sarcolemma  sarcolemma  costamere  costamere  regulation of RNA splicing  regulation of RNA splicing  cell-cell contact zone  S100 protein binding  membrane raft  cadherin binding  extracellular exosome  extracellular exosome  structural molecule activity conferring elasticity  regulation of voltage-gated calcium channel activity  
NDEx NetworkAHNAK
Atlas of Cancer Signalling NetworkAHNAK
Wikipedia pathwaysAHNAK
Orthology - Evolution
OrthoDB79026
GeneTree (enSembl)ENSG00000124942
Phylogenetic Trees/Animal Genes : TreeFamAHNAK
Homologs : HomoloGeneAHNAK
Homology/Alignments : Family Browser (UCSC)AHNAK
Gene fusions - Rearrangements
Fusion : MitelmanAHNAK/RPS6KA4 [11q12.3/11q13.1]  
Fusion : MitelmanAHNAK/STIP1 [11q12.3/11q13.1]  
Fusion : MitelmanAHNAK/ZNF827 [11q12.3/4q31.21]  
Fusion : MitelmanAHNAK/ZNFX1 [11q12.3/20q13.13]  
Fusion : MitelmanARHGAP32/AHNAK [11q24.3/11q12.3]  
Fusion : MitelmanHNRNPUL2/AHNAK [11q12.3/11q12.3]  
Fusion : QuiverAHNAK
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAHNAK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AHNAK
dbVarAHNAK
ClinVarAHNAK
MonarchAHNAK
1000_GenomesAHNAK 
Exome Variant ServerAHNAK
GNOMAD BrowserENSG00000124942
Varsome BrowserAHNAK
ACMGAHNAK variants
VarityQ09666
Genomic Variants (DGV)AHNAK [DGVbeta]
DECIPHERAHNAK [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAHNAK 
Mutations
ICGC Data PortalAHNAK 
TCGA Data PortalAHNAK 
Broad Tumor PortalAHNAK
OASIS PortalAHNAK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAHNAK  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAHNAK
Mutations and Diseases : HGMDAHNAK
intOGen PortalAHNAK
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaAHNAK
DgiDB (Drug Gene Interaction Database)AHNAK
DoCM (Curated mutations)AHNAK
CIViC (Clinical Interpretations of Variants in Cancer)AHNAK
Cancer3DAHNAK
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM103390   
Orphanet
DisGeNETAHNAK
MedgenAHNAK
Genetic Testing Registry AHNAK
NextProtQ09666 [Medical]
GENETestsAHNAK
Target ValidationAHNAK
Huge Navigator AHNAK [HugePedia]
ClinGenAHNAK
Clinical trials, drugs, therapy
MyCancerGenomeAHNAK
Protein Interactions : CTDAHNAK
Pharm GKB GenePA24640
PharosQ09666
Clinical trialAHNAK
Miscellaneous
canSAR (ICR)AHNAK
HarmonizomeAHNAK
DataMed IndexAHNAK
Probes
Litterature
PubMed147 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAHNAK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 14:58:53 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.